Fig. 5
From: ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features
Examples for the predictions of RF-ChIPr for variable and non-variable loops. A Predictions of RF-ChIPr are highly similar to the original data for the selected region surrounding SMAD3 gene. B Predictions of RF-ChIPr are highly similar to the original data for the non-variable loops in the region covering the two genes MED29 and ZFP36 in the four cell lines GM12878, K562, H1, and HepG2. Interactions shown in A and B are those having strength ≥ “3”. Red: original loops from RAD21 ChIA-PET data; blue: predicted loops by RF-ChIPr