Table 1 Description of statistics used to rank genes and the p-value adjustment methods used by each package
From: Evaluating spatially variable gene detection methods for spatial transcriptomics data
SVG Method | Statistic | p-value adj. |
|---|---|---|
Giotto k-means | -log10(adjusted p-value) | BH |
Giotto rank | -log10(adjusted p-value) | BH |
MERINGUE | observed coefficient | BH |
Moran’s I | observed coefficient | BH |
nnSVG | LLR statistic | BH |
SOMDE | LLR statistic | q-value |
SPARK-X | -log10(adjusted p-value) | BY |
SpatialDE | LLR statistic | q-value |