Table 1 GTax database content
From: GTax: improving de novo transcriptome assembly by removing foreign RNA contamination
Taxonomy group | No. of taxonomies | RefSeq sequences | Size (GB) |
|---|---|---|---|
Bacteria | 8558 | 16,137 | 35.11 |
Archaea | 336 | 554 | 0.90 |
Liliopsida | 21 | 265 | 26.83 |
Eudicotyledons | 79 | 880 | 39.17 |
Viridiplantae | 12 | 184 | 4.52 |
Fungi | 82 | 797 | 1.70 |
Arthropoda | 101 | 1364 | 26.06 |
Neoteleostei | 75 | 1437 | 44.60 |
Actinopterygii | 37 | 1047 | 45.52 |
Glires | 25 | 2178 | 30.44 |
Primates | 20 | 433 | 39.32 |
Carnivora | 31 | 286 | 28.89 |
Artiodactyla | 28 | 447 | 36.90 |
Amphibia | 9 | 122 | 30.36 |
Sauropsida | 61 | 1073 | 46.17 |
Sarcopterygii | 29 | 229 | 26.83 |
Chordata | 11 | 301 | 13.99 |
Eukaryota | 71 | 803 | 8.76 |
Viruses | 11,071 | 13,555 | 0.44 |