Table 1 Statistics for genome assembly and annotation for the nine selected Vitis species
From: A super-pangenome of the North American wild grape species
Species | Accession | Sequence length (Mb)a | Anchored sequence (%) | Contig N50 (Mb) | Scaffold N50 (Mb) | Gene counta | Anchored gene (%) | Repeats (%)a | BUSCO (%)a |
|---|---|---|---|---|---|---|---|---|---|
V. acerifolia | 9018 | 486|482|55 | 94.6 | 0.31 | 1.74 | 31,605|31,193|2,751 | 95.8 | 44.7|44.8|56.7 | 90.8|90.5| 5.5 |
V. aestivalis | T52 | 548|545|97 | 91.8 | 0.96 | 2.45 | 32,795|33,222|5,373 | 92.5 | 47.8|47.9|53.4 | 94.6|93.8|10.1 |
V. arizonica | B40-14 | 466|423|66 | 93.1 | 0.68 | 9.21 | 28,043|25,925|3,035 | 94.7 | 47.3|47.0|59.8 | 89.9|83.9| 6.1 |
V. berlandieri | 9031 | 554|549|114 | 90.6 | 1.06 | 2.68 | 33,866|33,472|6,804 | 90.8 | 47.7|47.5|52.1 | 95.3|95.0|12.6 |
V. girdiana | SC2 | 464|476|65 | 93.5 | 1.14 | 4.08 | 28,765|29,882|2,884 | 95.3 | 47.2|46.4|58.9 | 92.9|81.7| 5.6 |
V. monticola | TX6703 | 521|505|99 | 91.2 | 0.57 | - | 33,281|32,299|5,941 | 91.7 | 45.9|45.3|51.3 | 93.7|88.2|16.9 |
V. mustangensis | C114-96 | 454|432|71 | 92.6 | 0.49 | 1.13 | 27,803|26,177|3,510 | 93.9 | 44.5|44.3|56.3 | 92.8|85.3|11.0 |
V. riparia | HP-1 | 520|506|113 | 90.1 | 1.09 | - | 32,717|31,793|6,778 | 90.5 | 46.9|46.8|52.6 | 95.9|91.4|15.5 |
V. rupestris | B38 | 449|448|41 | 95.6 | 0.80 | 9.22 | 29,038|28,798|1,621 | 97.3 | 45.4|45.3|58.8 | 93.2|92.6| 4.6 |