FORGEdb: a tool for identifying candidate functional variants and uncovering target genes and mechanisms for complex diseases

Table 1 A comparison of features across FORGEdb, HaploReg and RegulomeDB

	FORGEdb	HaploReg	RegulomeDB
Roadmap chromatin states	Yes	Yes	Yes
TF motifs	Yes	Yes	Yes
SNP scoring system	Yes	No	Yes
Roadmap DNase-seq	Yes	Yes	No
Roadmap H3 histone mark data	Yes	Yes	No
SiPhy cons	No	Yes	No
caQTLs	No	No	Yes
3D genomic data (ABC Hi-C-based data)	Yes	No	No
CADD v1.6 data across different alleles	Yes	No	No
GTEx v8 allele-specific association data	Yes	No	No
eQTLGen allele-specific association data	Yes	No	No
BLUEPRINT DNase-seq	Yes	No	No
Allele-specific TF binding data (CATO)	Yes	No	No
Zoonomia allele-specific conservation data	Yes	No	No
ENCODE4 regulatory element CRISPR sgRNAs	Yes	No	No

ISSN: 1474-760X