Table 1 Summary statistics and comparison of the haplotype-resolved Chinese Quartet assemblies to other assemblies
From: Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet
Sample | Haplotype | Genome length (Gb) | No. of contigs | Contig N50 (Mb) | Completeness (BUSCO) | QV | Switch error |
|---|---|---|---|---|---|---|---|
Chinese Quartet | Paternal | 3.05 | 279 | 132.84 | 95.7% | 50–58 | 0.050% |
Maternal | 3.05 | 276 | 132.84 | 95.7% | 52–59 | 0.048% | |
HJ [50] | Paternal | 3.07 | 1330 | 28.15 | 94.9% | 52–59 | 0.815% |
Maternal | 2.91 | 896 | 25.90 | 93.5% | 54–58 | 0.813% | |
NA12878 [51] | Hap1 | 2.88 | 4363 | 18.3 | 95.5% | 51–60 | 0.449% |
Hap2 | 2.88 | 4449 | 21.9 | 95.4% | 51–60 | 0.435% | |
HG00733 [51] | Hap1 | 2.92 | 3728 | 23.7 | 94.9% | 50–59 | 0.169% |
Hap2 | 2.92 | 3795 | 25.9 | 95.1% | 51–59 | 0.171% | |
HG002 [56] | Paternal | 2.96 | 631 | 84.93 | 93.7% | NA | NA |
Maternal | 3.06 | 464 | 62.88 | 95.9% | NA | NA | |
HPRC [36]a | Paternal | 3.00 | 439 | 40.36 | 95.0% | NA | NA |
Maternal | 3.04 | 378 | 40.90 | 95.9% | NA | NA | |
YH2.0 [54] | Collapsed | 2.91 | 361,157 | 0.02 | 94.2% | NA | NA |
HX1 [52] | Collapsed | 2.93 | 5845 | 8.33 | 94.0% | NA | NA |
NH1.0 [53] | Collapsed | 2.89 | 11,019 | 3.6 | 94.6% | NA | NA |
GRCh38.p13b | Collapsed | 3.21 | 685 | 56.41 | 94.7% | NA | NA |
CHM13-T2T(v2.0) [31] | / | 3.12 | 25 | 150.6 | 96.0 | NA | NA |