From: GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation
Dataset | Core clusters [%BUSCO] | Multiple copies | Shell clusters | gDNA segments | Match Compara | Share InterPro domains | |
---|---|---|---|---|---|---|---|
Compara orthogroups | ACK2 | 20,192 [90.6] | 161 | [18,259] | |||
minimap2 clusters | ACK2 | 20,647 [94.1] | 731 | 18,245 | [18,792] | ||
GSAlign clusters | ACK2 | 16,476 [74.9] | 454 | 14,181 | [14,817] | ||
Compara orthogroups | rice3 | 13,020 [65.6] | 219 | 6386 | 16,766 [11,571] | ||
minimap2 clusters | rice3 | 22,880 [85.2] | 3360 | 7825 | 6521 | 18,281 | 23,062 [19,239] |
GSAlign clusters | rice3 | 20,399 [84.6] | 2885 | 9730 | 6103 | 17,103 | 22,834 [17,135] |