Table 4 CUT&RUN samples used in our experiments, with their sequencing technique, indices, and target read details. Target reads represent the number of single-end equivalent Illumina passing-filter read estimates we sought to obtain
From: Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet
Sample name | Technique | i7 Index | i5 Index | Target reads (millions of single reads) |
|---|---|---|---|---|
OCT-4_Pool_1 | CUT&RUN | TCTAGGAG | AGGTCACT | 40 |
OCT-4_Pool_2 | CUT&RUN | TGCGTAAC | GATAGGCT | 40 |
IgG_Pool_1 | CUT&RUN | CTTGCTAG | GGAGATGA | 20 |
OCT-4_Pool_1_BS | CUT&RUN-BS | AGCGAGAT | GATACTGG | 180 |
OCT-4_Pool_2_BS | CUT&RUN-BS | TATGGCAC | TCTCGCAA | 180 |
IgG_Pool_1_BS | CUT&RUN-BS | GAATCACC | CTTCGTTC | 40 |
Oct-4_hmeseal_rep_1 | CUT&RUN-5hmC | GTAAGGTG | GCAATTCG | 150 |
Oct-4_hmeseal_rep_2 | CUT&RUN-5hmC | CGAGAGAA | TCTCTTCC | 150 |