Fig. 8
From: Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet
Conditions on the MLML [68] confidence levels of 5mC (m) and 5hmC (h) in relation to a threshold t that lead to the calling of different modified nucleobases. We call a modification if m or h equal or exceed the threshold. These base assignments assume that MLML had no conflicts for the locus under consideration. If any conflicts occur, we use z as the base, irrespective of the values of m or h. We depict bases for the positive strand only, and complement those occurring on the negative strand, as outlined in Tables 1 and 2