Table 2 Relative species abundance in each mock microbiome community as calculated by the tool CoverM [29]. Abundance based on read coverage of reference genome sequence adjusted for genome size
From: Ariadne: synthetic long read deconvolution using assembly graphs
Dataset | Species | Relative abundance |
|---|---|---|
MOCK5 10x | Enterobacter cloacae | 7.129894635 |
| Â | Pseudomonas fluorescens | 11.63274034 |
| Â | Micrococcus luteus | 16.54618068 |
| Â | Escherichia coli | 22.04082093 |
| Â | Staphylococcus epidermidis | 42.6503661 |
MOCK5 LoopSeq | Pseudomonas aeruginosa | 2.2308808 |
| Â | Streptococcus mutans | 5.312954304 |
| Â | Porphyromonas gingivalis | 26.40226344 |
| Â | Escherichia coli | 28.9818004 |
| Â | Rhodobacter sphaeroides | 37.07210106 |
MOCK20 10x and TELL-Seq | Schaalia odontolytica | 0.005069583 |
| Â | Bifidobacterium adolescentis | 0.005194844 |
| Â | Deinococcus radiodurans | 0.014251377 |
| Â | Enterococcus faecalis | 0.015894382 |
| Â | Bacteroides vulgatus | 0.027645357 |
| Â | Cutibacterium acnes | 0.184333912 |
| Â | Lactobacillus gasseri | 0.189651678 |
| Â | Neisseria meningitidis | 0.229268868 |
| Â | Helicobacter pylori | 0.241180209 |
| Â | Acinetobacter baumannii | 0.250956306 |
| Â | Bacillus cereus | 1.214779563 |
| Â | Clostridium beijerinckii | 1.220119982 |
| Â | Pseudomonas aeruginosa | 1.366135524 |
| Â | Staphylococcus aureus | 1.816064537 |
| Â | Streptococcus agalactiae | 1.914207527 |
| Â | Rhodobacter sphaeroides | 13.2715074 |
| Â | Escherichia coli | 16.14207583 |
| Â | Staphylococcus epidermidis | 19.55632719 |
| Â | Porphyromonas gingivalis | 21.07923273 |
| Â | Streptococcus mutans | 21.25610476 |