Table 1 The table reports the rates of identity between UFRJ50816 (sequenced genome) and its reconstructions via YPS138 (reference genome) in combination with the matrix entries computed by MSV and Gridds. For comparison purposes, in the last row, the identity between YPS138 and UFRJ50816 is reported for all chromosomes. Here, the identity between two chromosomes is the quotient of the number of matches between both chromosomes and the size of smaller chromosome. In each column, the entry showing the highest amount of identity is highlighted in bold, where the sequenced genome (first row) itself is excluded
Reconstruction with calls from | Chromosome | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | ||
Identity to sequenced genome | Sequenced genome | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% | 100% |
MSV | 99.1% | 99.3% | 99.2% | 99.9% | 99.8% | 97.1% | 99.9% | 98.8% | 98.9% | 98.6% | 99.7% | 99.9% | 99.8% | 99.7% | 99.7% | 99.9% | |
Gridss | 96.5% | 99.5% | 95.8% | 98.5% | 88.7% | 92.8% | 99.2% | 99.4% | 98.3% | 98.6% | 99.0% | 80.6% | 64.0% | 97.3% | 99.5% | 99.6% | |
Reference genome | 97.4% | 85.8% | 98.5% | 72.5% | 92.3% | 97.8% | 94.5% | 97.7% | 76.1% | 97.6% | 83.9% | 90.6% | 85.5% | 88.3% | 93.8% | 91.6% | |