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Fig. 4 | Genome Biology

Fig. 4

From: Sensitive inference of alignment-safe intervals from biodiverse protein sequence clusters using EMERALD

Fig. 4

CPU runtime of EMERALD. a Computational run time for all DIAMOND DeepClust clusters generated from the filtered Swiss-Prot database using the threshold combination \(\alpha = 0.75\) and \(\Delta = 8\) and calculated on a single thread. Each dot corresponds to a protein sequence cluster and the color of each dot indicates its number of corresponding member sequences. b Maximum memory consumption of EMERALD runs. For all trialed \(\alpha\) and \(\Delta\) parameter settings, the average memory consumption for each cluster ranged between \(205\) and 207 Mb and the average run time between \(11.4\) and 11.5 s

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Genome Biology

ISSN: 1474-760X

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