Table 1 Summary of datasets used for benchmarking
Dataset | Tissue type | Data type | Sequencing protocol | Species |
|---|---|---|---|---|
Baron | Pancreatic islet | scRNA-seq | inDrop/CEL-Seq (Illumina Hi-Seq 2500) | Human |
Segerstolpe | Pancreatic islet | scRNA-seq | FACS/Smart-Seq2 | Human |
Enge | Pancreatic tissue | scRNA-seq | FACS/Smart-Seq2 | Human |
Darmanis | Middle temporal gyrus | scRNA-seq | Smart-Seq | Human |
IP | Temporal lobe cortex | Bulk RNA-seq | Illumina Next-Seq | Human |
CA | Middle temporal gyrus | snRNA-seq | Smart-Seq2 | Human |
NG | Prefrontal cortex | snRNA-seq | 10X Chromium | Human |
MM | Cerebral cortex | Bulk RNA-seq | Illumina Hi-Seq 2000 | Mouse |