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Fig. 3 | Genome Biology

Fig. 3

From: NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentiality

Fig. 3

Nucleosome phasing and spacing of each of HMM states. A A schematic diagram shows the definition of nucleosome phasing and spacing. The upper nucleosome array has a higher phasing score than the bottom nucleosome array does. Nucleosome spacing is the distance between two dyads of the nucleosomes. B A nuc-array-coverage plot showed the normalized nucleosome array frequency coverage of each state in the 1 kb range. 0 is the start position of the array with a certain HMM state. C A bar plot showed the phasing score of each HMM state calculated by Welch’s method. D A line plot of nucleosome spacing. The interval is the distance between two peaks in panel B which is also the nucleosome spacing. We averaged 4 nucleosome spacing in the 1Kb nucleosome array as the nucleosome spacing value. The final nucleosome spacing values for each state were shown next to the legend

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Genome Biology

ISSN: 1474-760X

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