Table 2 Error rates (in %) for the raw and corrected long reads in 4 Icelandic trios and one Ashkenazim trio. Best results are highlighted
From: Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
Raw | FMLRC | Ratatosk | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
C | F | M | C | F | M | C | F | M | ||
Mean | I1 | 11.89 | 11.19 | 10.89 | 3.85 | 3.55 | 3.32 | 1.67 | 1.73 | 1.63 |
I2 | 10.52 | 11.20 | 10.14 | 3.20 | 3.48 | 2.94 | 1.62 | 1.71 | 1.49 | |
I3 | 9.98 | 10.52 | 10.78 | 3.07 | 3.16 | 3.47 | 1.65 | 1.58 | 1.02 | |
I4 | 10.74 | 11.18 | 10.17 | 3.26 | 3.57 | 2.93 | 1.47 | 1.66 | 1.44 | |
HO | 8.81 | 7.82 | 8.24 | 2.53 | 2.23 | 2.23 | 1.40 | 1.37 | 1.29 | |
HP | 14.66 | 14.80 | 15.02 | 7.38 | 7.54 | 7.60 | 3.03 | 3.12 | 3.08 | |
Median | I1 | 9.95 | 9.10 | 8.84 | 1.41 | 1.18 | 1.11 | 0.24 | 0.25 | 0.23 |
I2 | 8.37 | 9.05 | 8.22 | 1.00 | 1.15 | 0.88 | 0.23 | 0.24 | 0.22 | |
I3 | 7.95 | 8.42 | 8.72 | 1.03 | 0.99 | 1.27 | 0.27 | 0.23 | 0.27 | |
I4 | 8.91 | 9.34 | 8.16 | 1.23 | 1.33 | 0.96 | 0.22 | 0.22 | 0.22 | |
HO | 6.95 | 5.95 | 6.62 | 0.55 | 0.50 | 0.56 | 0.27 | 0.26 | 0.26 | |
HP | 14.02 | 14.15 | 14.48 | 4.86 | 4.98 | 5.11 | 0.34 | 0.34 | 0.34 | |