Table 1 Statistics of the V. sylvestris genome
| Â | Primary contigs | Anchored primary contigs | Primary pseudomolecules (without chrUn) | Primary pseudomolecules (with chrUn) | Haplotigs | Anchored haplotigs | Haplotigs pseudomolecules (without chrUn) | Haplotigs pseudomolecules (with chrUn) | |
|---|---|---|---|---|---|---|---|---|---|
Number | 591 | 476 | 19 | 20 | 3781 | 3537 | 19 | 20 | |
Mean length (b) | 792,724 | 947,992 | 23,761,734 | 23,439,278 | 83,879 | 86,014 | 16,030,808 | 15,876,286 | |
Median length (b) | 421,056 | 584,495 | 22,587,513 | 22,585,150 | 36,553 | 37,333 | 16,051,524 | 15,790,240 | |
Max length (b) | 6,865,695 | 6,865,695 | 34,169,506 | 34,169,506 | 2,541,772 | 2,541,772 | 26,261,478 | 26,261,478 | |
L50 | 82 | 77 | 8 | 8 | 483 | 453 | 8 | 8 | |
N50 (b) | 1,711,677 | 1,773,898 | 22,747,317 | 22,747,317 | 173,606 | 179,170 | 16,516,492 | 16,516,492 | |
Assembly size (b) | 468,500,071 | 451,244,463 | 451,472,963 | 468,785,571 | 317,149,633 | 304,233,565 | 304,585,365 | 317,525,733 | |
BUSCO | Complete and single copy | 92.6% | 92.8% | 93.5% | 93.2% | 59.7% | 59.7% | 61.5% | 61.7% |
Complete and duplicated | 2.6% | 2.5% | 1.7% | 1.8% | 3.8% | 3.8% | 1.9% | 1.9% | |
Fragmented | 1.9% | 1.9% | 1.8% | 1.9% | 1.9% | 1.8% | 1.6% | 1.7% | |
Missing | 2.9% | 2.8% | 3.0% | 3.1% | 34.6% | 34.7% | 35.0% | 34.7% | |
Number of annotated genes | 40,928 | 40,172 | 40,172 | 40,928 | 28,303 | 27,593 | 27,593 | 28,303 | |
Number of annotated protein-coding genes | 39,031 | 38,371 | 38,371 | 39,031 | 26,625 | 26,102 | 26,102 | 26,625 | |