Fig. 6

Sequence read mapping and variant genotyping using a breed-specific augmented whole-genome graph. a Proportion of sequencing reads that mapped perfectly and uniquely to the BSW-specific augmented (circle) and Hereford-based linear (triangle, cross) reference. b Concordance between sequence variant and corresponding microarray-derived genotypes as a function of sequencing depth. Sequence variant genotypes were obtained using the multi-sample variant calling approach implemented in SAMtools. c Corresponding precision-recall statistic. Each symbol represents one BSW animal