Fig. 3

Demonstration of the impact of recall when tested SVs include errors in their breakpoints. Breakpoint deviations measure the differences in positions between matching deletions in the CLR calls and in LRGT. Paragraph recall was estimated using CLR calls as genotyping input and TPs in LRGT as the ground truth. Breakpoint deviations were binned at 1 bp for deviations less than 18 bp and at 2 bp for deviations larger or equal to 19 bp. Solid bars show the number of deletions in each size range (left axis). Points and the solid line show the recall for individual size and the overall regression curve (right axis)