From: Bazam: a rapid method for read extraction and realignment of high-throughput sequencing data
Tool | Storage used | Memory | Effective Cores | Time |
---|---|---|---|---|
Sort-Extract-Realign | 282 GB | 20 GB | 16 | 13 h, 15 min |
Picard SamToFastq | 148 GB | 78 GB | 16 | 16 h, 14 min |
Biobambam bamtofastq | 149 GB | 30 GB | 16 | 15 h 30 min |
Bazam (no sharding) | 68 GB | 28 GB | 16 | 14 h, 55 min |
Bazam 10-way sharding | 102 GB | 20 GB | 160 | 1 h, 11 min |