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Table 3 Genes and transcripts in CHESS (v2.1) that are also found in either RefSeq (rel 108) or GENCODE (v27) (columns 2 and 5) and that are unique to CHESS (columns 3 and 6)

From: CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise

Gene biotype

Genes

Transcripts

Shared by RefSeq or GENCODE

Novel in CHESS

Novel + FANTOM

Shared by RefSeq or GENCODE

Novel in CHESS

Novel + FANTOM

Protein coding

20,128

224

26

169,959

96,372

23,102

LncRNA

16,216

2671

1407

34,222

15,670

5840

Antisense

598

1546

494

637

2051

606

MiscRNA

1227

1

1

2284

2063

476

  1. The columns labeled “Novel + FANTOM” show the subset of CHESS genes and transcripts that are not found in RefSeq or GENCODE but that are present in the FANTOM gene catalog