Table 1 IWGSC open access data summary hosted in the IWGSC data repository of the Wheat@URGI portal in July 2018
Data | Details | Tools | Contacts |
|---|---|---|---|
IWGSC RefSeq v1.0 assembly | Scaffolds, super scaffolds, pseudomolecules | Download, BLAST, browser, and InterMine | IWGSC |
IWGSC RefSeq v1.0 annotation | Genes, transposable elements, non-coding RNAs, markers, functional annotation, varietal SNPs, GBS maps, optical maps, Radiation Hybrid maps | Download, browser, and InterMine | IWGSC |
IWGSC RefSeq v1.1 annotation | Genes, RNA-Seq mapping | Download, browser, and InterMine | IWGSC |
IWGSC WGA v0.4 assembly | Scaffolds, superscaffolds, pseudomolecules | Download and BLAST | IWGSC |
IWGSC Survey sequence v2 assembly and annotation | Contigs, gene models, markers, Genome Zipper, POPSEQ | Download, BLAST, and browser | IWGSC, Mihaela Martis, Manuel Spannagl, Klaus Mayer, Nils Stein, Curtis Pozniak, Eduard Akhunov |
IWGSC Survey sequence v3 assembly and annotation | Scaffolds, gene models | Download, BLAST, and browser | Andy Sharpe, David Konkin, Curtis Pozniak |
3B reference sequence assembly and annotation | Contig, scaffolds, pseudomolecule, genes, transposable elements, RNAs, markers | Download, BLAST, and browser | Frédéric Choulet, Etienne Paux |
Other wheat species WGS assemblies | Triticum durum cv. Cappelli, Triticum durum cv. Strongfield, Triticum monococcum, Aegilops speltoides, Aegilops sharonensis, Triticum urartu, Aegilops tauschii | Download and BLAST | Jon Wright, Mario Caccamo |
Expression | Deep transcriptome sequencing | Download | Lise Pingault, Etienne Paux |
Triticum urartu and Triticum turgidum (GrainGenes) | Download | Jorge Dubcovsky | |
Variations | Varietal SNPs | Download and browser | Jorge Dubcovsky, Eduard Akhunov |
IWGSC SNPs | Download | Etienne Paux | |
GBS and Whole Exome Capture | Download | Eduard Akhunov | |
Physical maps | 1AS v1 and v2 | Download and browser | James Breen, Thomas Wicker, Beat Keller |
1AL v1 and v2 | Download and browser | Stuart Lucas, Hikmet Budak | |
2AS | Download and browser | Kuldeep Singh | |
2AL | Download and browser | Kuldeep Singh | |
3AS v1 | Download and browser | Sunish Sehgal, Bikram Gill | |
3AS v2 | Download and browser | Sunish Sehgal, Bikram Gill | |
3AL | Download and browser | Vijay Kumar Tiwari | |
4AS | Download and browser | Miroslav Valarik, Jaroslav Dolezel | |
4AL v1 and v2 | Download and browser | Miroslav Valarik, Jaroslav Dolezel | |
5AS | Download and browser | Simone Scalabrin | |
5AL | Download and browser | Simone Scalabrin | |
6AS | Download and browser | Naser Poursarebani | |
6AL | Download and browser | Naser Poursarebani | |
7AS | Download and browser | Gabriel Keeble-Gagnere | |
7AL | Download and browser | Gabriel Keeble-Gagnere | |
1BS v1, v2, v3, and v5 | Download and browser | Dina Raats, Zeev Frenkel, Abraham Korol | |
1BL v1 and v2 | Download and browser | Etienne Paux | |
2BS | Download and browser | John Jacobs | |
2BL | Download and browser | John Jacobs | |
3B | Download and browser | Etienne Paux | |
4BS | Download and browser | John Jacobs | |
4BL | Download and browser | John Jacobs | |
5BS | Download and browser | Elena Salina | |
5BL | Download and browser | John Jacobs | |
6BS v1 and v2 | Download and browser | Fuminori Kobayashi, Hirokazu Handa | |
6BL v1 and v2 | Download and browser | Fuminori Kobayashi, Hirokazu Handa | |
7BS | Download and browser | Tatiana Belova, Odd-Arne Olsen | |
7BL | Download and browser | Tatiana Belova, Odd-Arne Olsen | |
1D | Download and browser | Bikram Gill, Sunish Sehgal, Vijay Kumar Tiwari | |
2DS | Download and browser | John Jacobs | |
2DL | Download and browser | John Jacobs | |
3DS v1 and v2 | Download and browser | Jan Bartos, Jaroslav Dolezel | |
3DL | Download and browser | Jon Wright, Mario Caccamo, Mike Bevan | |
4D | Download and browser | Bikram Gill, Sunish Sehgal, Vijay Kumar Tiwari | |
5DS | Download and browser | Hikmet Budak, Bala Ani Akpinar | |
5DL | Download and browser | John Jacobs | |
6D | Download and browser | Bikram Gill, Sunish Sehgal, Vijay Kumar Tiwari | |
7DS | Download and browser | Hana Simkova, Jaroslav Dolezel | |
7DL | Download and browser | Song Weining, Wang Le |