Table 1 Primers/oligos used in this study

Tet1 sgRNA-F

CACCggctgctgtcagggagctca

Tet1 sgRNA-R

AAACtgagctccctgacagcagcc

Tet2 sgRNA-F

CACCgaaagtgccaacagatatcc

Tet2 sgRNA-R

AAACggatatctgttggcactttc

Tet3 sgRNA-F

CACCgagtgccccgacttcctcgag

Tet3 sgRNA-R

AAACctcgaggaagtcggggcactc

Eed sgRNA 1-F

CACCgaggtgctgccgccttgtttt

Eed sgRNA 1-R

AAACaaaacaaggcggcagcacctc

Eed sgRNA 2-F

CACCgctacttttgaattcacatc

Eed sgRNA 2-R

AAACgatgtgaattcaaaagtagc

4C bait in DMV Pax6-F without adapters

tcagtgggagaggccactgg

4C bait in DMV Pax6-R without adapters

ccccacagtccatctctcag

4C bait in DMV Pax6-F with adapters

Aatgatacggcgaccaccgagatctacactctttccctacacgacg ctcttccgatcttcagtgggagaggccactgg

4C bait in DMV Pax6-R with adapters

Caagcagaagacggcatacgagatcaggatgtgactggagttcag acgtgtgctcttccg

4C bait out of DMV Pax6-F without adapters

aacagacattctttgccact

4C bait out of DMV Pax6-R without adapters

acatttggaggccacagatc

4C bait out of DMV Pax6-F with adapters

aatgatacggcgaccaccgagatctacactctttccctacacgacgctcttccgatctaacagacattctttgccact

4C bait out of DMV Pax6-R with adapters

caagcagaagacggcatacgagattgtggcgtgactggagttcagacgtgtgctcttccg

4C bait in DMV Nkx2-2-F without adapters

tccacgcagaattctttagt

4C bait in DMV Nkx2-2-R without adapters

tatctccagctgtgcctgt

4C bait in DMV Nkx2-2-F with adapters

aatgatacggcgaccaccgagatctacactctttccctacacgacgctcttccgatcttccacgcagaattctttagt

4C bait in DMV Nkx2-2-R with adapters

caagcagaagacggcatacgagattacgacgtgactggagttcagacgtgtgctcttccg

4C bait out of DMV Nkx2-2-F without adapters

gcctaggcactggaaaactg

4C bait out of DMV Nkx2-2-R without adapters

agaccaggactcacaccaca

4C bait out of DMV Nkx2-2-F with adapters

aatgatacggcgaccaccgagatctacactctttccctacacgacgctcttccgatctgcctaggcactggaaaactg

4C bait out of DMV Nkx2-2-R with adapters

caagcagaagacggcatacgagatacagacgtgactggagttcagacgtgtgctcttcc