Sample | Method | Number of | Mapped |
---|---|---|---|
mapped reads | reads [%] | ||
3077 | Clip&Merge | 1,043,672 | 17.31 |
MergeTrimReads | 1,006,194 | 16.7 | |
CutAdapt + FLASH | 1,036,940 | 17.2 | |
SeqPrep | 949,073 | 15.74 | |
LeeHom | 981,558 | 16.28 | |
AdapterRemoval | 931,529 | 15.45 | |
Jorgen625 | Clip&Merge | 2,703,428 | 17.9 |
MergeTrimReads | 2,623,243 | 17.37 | |
CutAdapt + FLASH | 2,599,158 | 17.21 | |
SeqPrep | 2,595,366 | 17.19 | |
LeeHom | 2,617,909 | 17.34 | |
AdapterRemoval | 2,524,087 | 16.71 | |
Refshale16 | Clip&Merge | 13,368,593 | 33.49 |
MergeTrimReads | 13,812,705 | 34.6 | |
CutAdapt + FLASH | 11,533,714 | 28.9 | |
SeqPrep | 11,516,472 | 28.85 | |
LeeHom | 8,916,759 | 22.34 | |
AdapterRemoval | 11,431,717 | 28.64 | |
SK2 | Clip&Merge | 48,536,318 | 89.48 |
MergeTrimReads | 48,610,983 | 89.62 | |
CutAdapt + FLASH | 48,402,551 | 89.23 | |
SeqPrep | 48,240,750 | 88.93 | |
LeeHom | 48,337,919 | 89.11 | |
AdapterRemoval | 47,095,207 | 86.82 | |
SK8 | Clip&Merge | 1,283,126 | 12.96 |
MergeTrimReads | 1,280,119 | 12.93 | |
CutAdapt + FLASH | 1,109,626 | 11.21 | |
SeqPrep | 1,107,013 | 11.18 | |
LeeHom | 908,549 | 9.18 | |
AdapterRemoval | 1,100,326 | 11.12 | |
LBK1 | Clip&Merge | 113,843,504 | 50.1 |
CutAdapt + FLASH | 52,681,090 | 26.8 | |
SeqPrep | 109,491,426 | 51.6 | |
LeeHom | 111,943,019 | 50.9 | |
AdapterRemoval | 107,484,735 | 47.2 |