From: HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
 | Mapping | Detection of valid interactions | Binning | Correction of systematic noise | Parallel implementation | Allele-specific analysis |
---|---|---|---|---|---|---|
HOMER | Â | x | x | Â | Â | Â |
HICUP | x | x | Â | Â | Â | x |
HiC-inspector | xa | x | x | Â | Â | Â |
HiC-Box | xa | x | x | x | Â | Â |
HiCdat | xa | x | x | x | Â | Â |
Hiclib | x | x | x | x | Â | Â |
HiC-Pro | x | x | x | x | x | x |