Fig. 3

Motif discovery results for the fly data. The table presents the results obtained for each of the TFs (rows) using the genome based motif discovery using D. Melanogaster genome and using D. Pseudoobscura genomes and de novo assembly pipeline with SEECER and Velvet. For each TF we present the known motif (if it exists in the database). For each method we show: (1) the predicted motif and how the predicted motif matches (if any); (2) whether it matches the known motif in the JASPAR database; and (3) the motif rank in the DREME results for that method and the TOMTOM P value for the match with the known motif