Data set | Relative coverage thresholds (% of genome) | |||||
---|---|---|---|---|---|---|
Sample | # | Sequencing platform | = 0 | ≤0.1 | ≤0.25 | ≤0.5 |
P. falciparum 3D7 | 1 | Illumina MiSeq | 0.010 | 0.18 | 3.7 | 24 |
 | 2 | Ion Torrent PGM | 2.6 | 14 | 22 | 33 |
 | 3 | Pacific Riosciences RS | 0.012 | 0.13 | 0.33 | 2.7 |
 | 1+2 | Illumina + Ion Torrent | 0.0096 | 1.1 | 12 | 30 |
 | 2+3 | Ion Torrent + Pac Bio | 0.0062 | 0.097 | 1.6 | 17 |
 | 3+1 | Pac Bio + Illumina | 0.0051 | 0.040 | 0.33 | 7.9 |
E. coli K12 MG1655 | 4 | Illumina MiSeq | 0.00022 | 0.0019 | 0.019 | 0.54 |
 | 5 | Ion Torrent PGM | 0.00047 | 0.013 | 0.046 | 0.27 |
 | 6 | Pacific Biosciences RS | 0 | 0.00075 | 0.030 | 0.36 |
 | 4+5 | Illumina + Ion Torrent | 0 | 0.0012 | 0.0053 | 0.075 |
 | 5+6 | Ion Torrent + Pac Bio | 0 | 0.00037 | 0.0018 | 0.054 |
 | 6+4 | Pac Bio + Illumina | 0 | 0.00026 | 0.0012 | 0.061 |
R. sphaeroides 2.4.1 | 7 | Illumina MiSeq | 0.00094 | 0.045 | 0.39 | 2.7 |
 | 8 | Ion Torrent PGM | 0.88 | 19 | 36 | 47 |
 | 9 | Pacific Biosciences RS | 0.000048 | 0.0021 | 0.0071 | 0.067 |
 | 7+8 | Illumina + Ion Torrent | 0.0038 | 0.23 | 1.8 | 19 |
 | 8+9 | Ion Torrent + Pac Bio | 0.000024 | 0.00058 | 0.14 | 16 |
 | 9+7 | Pac Bio + Illumina | 0.00012 | 0.0018 | 0.017 | 0.49 |