Size | KAAS | BLAST2GO | TRAPID (GO) | TRAPID (GF)b |
|---|
50 | 2 (16%) | 29 (44%) | 5 (50%) | 5 (70%) |
500 | 4 (20%) | 232 (77%) | 3 (54%) | 3 (65%) |
5000 | 11 (23%) | - | 25 (54%) | 25 (66%) |
25392 | 32 (24%) | - | 95 (54%) | 95 (66%) |
- aTime is measured in minutes and numbers in parenthesis indicate the fraction of genes which received a GO functional annotation. The GO annotation for TRAPID was obtained through the protocol using the transfer from both the gene family and best-hit annotation. Missing values for BLAST2GO are due to runtimes larger than 24Â h. The data is based on the 25,392 transcripts of Panicum hallii.
- bGF indicates the fraction of transcripts assigned to a gene family.
