Table 1 Comparison of mapping efficiencies and estimation of methylation levels in various genomic contexts
From: BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation
BatMeth (%) | Bismark (%) | Â | ||||||
|---|---|---|---|---|---|---|---|---|
Mapping efficiency | CG | CHG | CHH | Mapping efficiency | CG | CHG | CHH | Oracle BS rate (%) |
94.2 | 0.0 | 0.0 | 0.0 | 91.1 | 0.0 | 0.0 | 0.0 | 0.0 |
94.0 | 10.0 | 10.0 | 10.0 | 92.1 | 10.0 | 10.0 | 10.0 | 10.0 |
93.9 | 20.0 | 20.0 | 20.0 | 92.4 | 20.0 | 20.1 | 20.0 | 20.0 |
93.8 | 30.0 | 30.0 | 30.0 | 92.5 | 29.9 | 30.0 | 30.0 | 30.0 |
93.6 | 39.9 | 40.0 | 40.0 | 92.5 | 40.0 | 40.0 | 40.0 | 40.0 |
93.5 | 50.0 | 50.0 | 50.0 | 92.6 | 50.0 | 50.0 | 50.0 | 50.0 |
93.4 | 60.0 | 60.0 | 60.0 | 92.6 | 60.0 | 60.1 | 60.0 | 60.0 |
93.2 | 70.0 | 70.0 | 70.0 | 92.7 | 70.0 | 70.0 | 70.0 | 70.0 |
93.0 | 79.9 | 80.0 | 80.0 | 92.6 | 79.9 | 80.0 | 80.0 | 80.0 |
92.8 | 90.0 | 90.0 | 90.0 | 92.6 | 90.1 | 90.0 | 90.0 | 90.0 |
92.6 | 100 | 100.0 | 100.0 | 92.6 | 100.0 | 100.0 | 100.0 | 100.0 |