| Percentage | Variant | Heterozygous | Homozygous | Transition/transversion | ||
---|---|---|---|---|---|---|---|
Sample | called | number | Syn. | Non-syn. | Syn. | Non-syn. | ratio |
CEU-D-NM-LN1 | 80.85 | 12,994 | 3,547 | 4,359 | 2,828 | 2,260 | 3.48 |
CEU-F-NM-LN1 | 79.68 | 12,501 | 3,413 | 4,182 | 2,726 | 2,180 | 3.45 |
CEU-M-NM-LN1 | 84.93 | 13,934 | 3,848 | 4,668 | 3,019 | 2,399 | 3.35 |
YRI-D-AG-LN1 | 86.38 | 17,214 | 5,161 | 6,082 | 3,266 | 2,705 | 3.44 |
YRI-D-AG-LN12 | 91.48 | 18,803 | 5,608 | 6,728 | 3,530 | 2,937 | 3.43 |
YRI-D-AG-LN123 | 93.33 | 19,468 | 5,804 | 6,974 | 3,665 | 3,025 | 3.41 |
YRI-D-AG-LN1234 | 94.17 | 19,719 | 5,869 | 7,061 | 3,708 | 3,081 | 3.41 |
YRI-D-AG-LN2 | 86.09 | 17,145 | 5,097 | 6,110 | 3,236 | 2,702 | 3.47 |
YRI-D-AG-LN3 | 86.04 | 17,161 | 5,127 | 6,091 | 3,238 | 2,705 | 3.47 |
YRI-D-AG-LN4 | 84.99 | 16,708 | 4,976 | 5,909 | 3,176 | 2,647 | 3.45 |
YRI-D-NM-LN1 | 84.27 | 17,146 | 5,014 | 6,273 | 3,272 | 2,587 | 3.47 |
YRI-D-NM-LN12 | 86.15 | 17,864 | 5,258 | 6,530 | 3,378 | 2,698 | 3.38 |
YRI-D-NM-LN123 | 86.71 | 18,081 | 5,328 | 6,608 | 3,405 | 2,740 | 3.35 |
YRI-D-NM-LN1234 | 87.01 | 18,208 | 5,376 | 6,642 | 3,426 | 2,764 | 3.33 |
YRI-D-NM-LN2 | 84.17 | 17,341 | 5,080 | 6,359 | 3,292 | 2,610 | 3.44 |
YRI-D-NM-LN3 | 84.06 | 17,328 | 5,101 | 6,336 | 3,289 | 2,602 | 3.40 |
YRI-D-NM-LN4 | 83.92 | 17,213 | 5,033 | 6,319 | 3,268 | 2,593 | 3.44 |
YRI-F-NM-LN1 | 85.26 | 17,389 | 5,006 | 6,217 | 3,446 | 2,720 | 3.38 |
YRI-F-NM-LN12 | 86.57 | 17,820 | 5,128 | 6,366 | 3,517 | 2,809 | 3.35 |
YRI-F-NM-LN2 | 84.62 | 17,294 | 4,966 | 6,194 | 3,419 | 2,715 | 3.41 |
YRI-M-AG-LN1 | 86.20 | 16,991 | 5,101 | 5,974 | 3,226 | 2,690 | 3.39 |
YRI-M-AG-LN12 | 90.97 | 18,452 | 5,523 | 6,539 | 3,501 | 2,889 | 3.36 |
YRI-M-AG-LN123 | 92.89 | 19,086 | 5,685 | 6,798 | 3,606 | 2,997 | 3.35 |
YRI-M-AG-LN1234 | 93.97 | 19,423 | 5,799 | 6,917 | 3,669 | 3,038 | 3.33 |
YRI-M-AG-LN2 | 83.48 | 16,095 | 4,859 | 5,619 | 3,059 | 2,558 | 3.37 |
YRI-M-AG-LN3 | 84.59 | 16,472 | 4,933 | 5,772 | 3,136 | 2,631 | 3.42 |
YRI-M-AG-LN4 | 85.95 | 16,832 | 5,032 | 5,897 | 3,215 | 2,688 | 3.38 |
YRI-M-NM-LN1 | 84.85 | 17,195 | 5,028 | 6,259 | 3,278 | 2,630 | 3.35 |
YRI-M-NM-LN12 | 86.33 | 17,742 | 5,219 | 6,458 | 3,358 | 2,707 | 3.29 |
YRI-M-NM-LN123 | 86.81 | 17,936 | 5,283 | 6,516 | 3,392 | 2,745 | 3.26 |
YRI-M-NM-LN1234 | 87.06 | 18,034 | 5,306 | 6,553 | 3,414 | 2,761 | 3.24 |
YRI-M-NM-LN2 | 84.52 | 17,222 | 5,043 | 6,271 | 3,285 | 2,623 | 3.35 |
YRI-M-NM-LN3 | 84.53 | 17,205 | 5,031 | 6,265 | 3,274 | 2,635 | 3.38 |
YRI-M-NM-LN4 | 84.40 | 17,197 | 5,045 | 6,252 | 3,268 | 2,632 | 3.36 |