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Table 2 Benchmark comparison on 150 yeast ChIP-chip datasets

From: Evidence-ranked motif identification

Motif finder

Number of successes top 4

Trawler

52 (43)

YMF

57 (38)

AlignACE

64 (44)

MEME

76 (47)

Weeder

78 (53)

Amadeus

90 (63)

ERMIT

92 (61)

cERMIT

114 (66)

  1. Comparison of cERMIT with other motif finders on the yeast dataset of 150 ChIP-chip experimental conditions corresponding to 77 unique transcription factors (adapted after [25]). In brackets are reported the number of unique transcription factors corresponding to the number of conditions recovered by each of the methods.