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Table 3 Top ten Gene Ontology categories using the standard method

From: Gene ontology analysis for RNA-seq: accounting for selection bias

GOID Term Ontology Rank standard Rank GOseq Median read count of genes in category
GO:0005515 Protein binding MF 1 11 206
GO:0005737 Cytoplasm CC 2 111 238
GO:0005634 Nucleus CC 3 4,303 228
GO:0000166 Nucleotide binding MF 4 2,546 252
GO:0005829 Cytosol CC 5 1,192 349
GO:0005783 Endoplasmic reticulum CC 6 6 197
GO:0003677 DNA binding MF 7 2,109 189
GO:0005794 Golgi apparatus CC 8 26 213
GO:0005622 Intracellular CC 9 3,592 187
GO:0016874 Ligase activity MF 10 88 353
  1. BP, biological process; CC, cellular component; MF, molecular function.