|  | Dendritic cells | Myeloid cells |  | Ratio to DC | |||||
---|---|---|---|---|---|---|---|---|---|---|
Probe set ID | Gene | BDCA1 | BDCA3 | pDC | Mono | Neu | CD16 cells | CD16 | Mono | Neu |
APC signature genes | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
203932_at | HLA-DMB | 8,636* | 7,929 | 5,894 | 5,194 | 173 | 2,581 | 0.3 | 0.6 | <0.1 |
205101_at | CIITA | 2,803 | 2,354 | 724 | 531 | 50 | 226 | <0.1 | 0.2 | <0.1 |
219574_at | MARCH1 | 587 | 777 | 544 | 1,214 | 58 | 810 | 1 | 2 | <0.1 |
201425_at | ALDH2 | 9,279 | 7,841 | 6,034 | 8,504 | 706 | 1,760 | 0.2 | 0.9 | <0.1 |
222891_s_at | BCL11A | 569 | 747 | 4,502 | 310 | 50 | 213 | <0.1 | <0.1 | <0.1 |
205504_at | BTK | 1,120 | 822 | 1,132 | 1,409 | 281 | 1,786 | 2 | 1 | 0.3 |
202295_s_at | CTSH | 6,197 | 2,528 | 1,211 | 3,949 | 75 | 2,440 | 0.39 | 0.6 | <0.1 |
213831_at | DQA1 | 11,535 | 7,503 | 5,919 | 4,701 | 50 | 252 | <0.1 | 0.4 | <0.1 |
215536_at | DQB2 | 432 | 391 | 157 | 180 | 81 | 52 | 0.1 | 0.4 | 0.2 |
209312_x_at | DRB1 | 14,608 | 14,477 | 13,250 | 11,915 | 228 | 14,007 | 1 | 0.8 | <0.1 |
209619_at | CD74 | 12,533 | 12,210 | 10,498 | 9,020 | 867 | 7,383 | 0.6 | 0.7 | <0.1 |
210042_s_at | CTSZ | 906 | 848 | 692 | 370 | 153 | 673 | 0.7 | 0.4 | 0.2 |
201560_at | CLIC4 | 920 | 305 | 663 | 3,023 | 165 | 354 | 0.4 | 3 | 0.2 |
217388_s_at | KYNU | 2,414 | 1,059 | 2,204 | 3,516 | 50 | 3,738 | 2 | 1 | <0.1 |
203927_at | NFKBIE | 529 | 272 | 232 | 197 | 63 | 290 | 0.5 | 0.4 | 0.1 |
220998_s_at | UNC93B1 | 966 | 850 | 1,938 | 862 | 449 | 1,235 | 0.6 | 0.4 | 0.2 |
Pan-DC signature genes | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
206674_at | FLT3 | 3,032 | 5,883 | 2,169 | 208 | <50 | <50 | <0.1 | <0.1 | <0.1 |
219256_s_at | SH3TC1 | 1,263 | 899 | 1,128 | 392 | 166 | 858 | 0.7 | 0.3 | 0.1 |
218617_at | TRIT1 | 1,159 | 1,246 | 1,851 | 509 | <50 | 339 | 0.2 | 0.3 | <0.1 |
231810_at | BRI3BP | 691 | 735 | 836 | 298 | 146 | 279 | 0.3 | 0.4 | 0.2 |
209139_s_at | PRKRA | 846 | 1,067 | 1,440 | 316 | 74 | 497 | 0.3 | 0.2 | <0.1 |
225764_at | ETV6 | 2,172 | 2,432 | 1,726 | 1,143 | 938 | 941 | 0.4 | 0.5 | 0.4 |
208837_at | TMED3 | 1,317 | 1,852 | 1,859 | 665 | <50 | 1,022 | 0.6 | 0.4 | <0.1 |
219218_at | BAHCC1 | 87 | 86 | 250 | <50 | <50 | <50 | 0.2 | 0.2 | 0.2 |
1552256_a_at | SCARB1 | 325 | 425 | 942 | 165 | 128 | 59 | <0.1 | 0.2 | 0.1 |
Non-DC signature genes | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
219243_at | GIMAP4 | 68 | <50 | <50 | 4,404 | 3,504 | 1,334 | 20 | 65 | 52 |
221704_s_at | VPS37B | 54 | <50 | <50 | 593 | 962 | 487 | 9 | 11 | 18 |
204891_s_at | LCK | <50 | <50 | <50 | 92 | 181 | 65 | - | - | - |
214582_at | PDE3B | 78 | <50 | <50 | 129 | 625 | 114 | 1 | 2 | 8 |
Myeloid signature genes | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
225987_at | STEAP4 | <50 | <50 | <50 | 877 | 6,090 | <50 | - | - | - |
1552773_at | CLEC4D | <50 | <50 | <50 | 452 | 520 | <50 | - | - | - |
222934_s_at | CLEC4E | 214 | 124 | 133 | 2,837 | 5,885 | 229 | 1 | 13 | 28 |
202974_at | MPP1 | 591 | 281 | 377 | 3,721 | 2,408 | 1,341 | 2 | 6 | 4 |
205098_at | CCR1 | 93 | <50 | 115 | 3,712 | 3,627 | 106 | 1 | 32 | 31 |
223044_at | SLC40A1 | 769 | 276 | 321 | 5,018 | 3,444 | <50 | - | 6 | 4 |
224341_x_at | TLR4 | 94 | <50 | <50 | 1,411 | 2,869 | 540 | 6 | 15 | 31 |
204714_s_at | F5 | <50 | <50 | <50 | 1,392 | 2,313 | <50 | - | - | - |
203561_at | FCGR2A | 1,010 | 44 | 51 | 2,985 | 7,151 | 2,857 | 3 | 3 | 7 |
210772_at | FPRL1 | <50 | <50 | <50 | 389 | 3,454 | 70 | 3 | - | - |
204924_at | TLR2 | 904 | 211 | 57 | 2,870 | 5,548 | 1,606 | 2 | 3 | 6 |
215223_s_at | SOD2 | 1,474 | 946 | 528 | 3,528 | 7,599 | 4,236 | 3 | 2 | 5 |
222218_s_at | PILRA | 1,168 | 150 | 136 | 2,899 | 4,035 | 3,982 | 3 | 2 | 3 |
210423_s_at | SLC11A1 | 81 | 60 | 38 | 1,767 | 2,930 | 3,334 | 41 | 22 | 36 |
203045_at | NINJ1 | 357 | 66 | 71 | 1,104 | 3,129 | 1,934 | 5 | 3 | 9 |
201669_s_at | MARCKS | 521 | 389 | <50 | 2,449 | 3,224 | 1,730 | 3 | 5 | 6 |
207697_x_at | LILRB2 | 1,271 | 78 | 774 | 3,353 | 3,711 | 4,903 | 4 | 3 | 3 |
1553297_a_at | CSF3R | 1,902 | 409 | 156 | 3,433 | 6,687 | 282 | 0.2 | 2 | 4 |
220088_at | C5AR1 | 56 | 34 | 93 | 2,316 | 5,099 | 3,824 | 41 | 25 | 55 |
221698_s_at | CLEC7A | 3,229 | 4,295 | 79 | 6,642 | 7,061 | 5,680 | 1 | 2 | 2 |
204204_at | SLC31A2 | 442 | 187 | <50 | 1,579 | 2,047 | 1,671 | 4 | 4 | 5 |