From: Rooting the eutherian tree: the power and pitfalls of phylogenomics
Model | #c | Ln L | #p | #s | #s/#p | AIC | AICc | Tree 1 | Tree 2 | Tree 3 |
---|---|---|---|---|---|---|---|---|---|---|
Nucleotide (GTR + Γ8) | 1 | -4,076,316.3 | 26 | 1,011,870 | 38,918.1 | 8,152,684.6 | 8,152,684.6 | 0.0 | 0.0 | 100.0 |
 | 5 | -4,059,904.9 | 130 | 1,011,870 | 7,783.6 | 8,120,069.8 | 8,120,069.8 | 0.0 | 0.0 | 100.0 |
 | 10 | -4,058,547.6 | 260 | 1,011,870 | 3,891.8 | 8,117,615.2 | 8,117,615.3 | 0.0 | 0.0 | 100.0 |
 | 56 | -4,055,469.5 | 1,456 | 1,011,870 | 695.0 | 8,113,851.0 | 8,113,855.2 | 0.1 | 0.0 | 99.9 |
 | 100 | -4,053,634.1 | 2,600 | 1,011,870 | 389.2 | 8,112,468.2 | 8,112,481.6 | 0.1 | 0.0 | 99.9 |
 | 200 | -4,049,237.9 | 5,200 | 1,011,870 | 194.6 | 8,108,875.8 | 8,108,929.5 | 0.2 | 0.0 | 99.8 |
 | 558 | -4,035,535.0 | 14,508 | 1,011,870 | 69.7 | 8,100,086.0 | 8,100,508.1 | 1.7 | 0.0 | 98.3 |
 | 930 | -4,022,303.0 | 24,180 | 1,011,870 | 41.8 | 8,092,966.0 | 8,094,150.0 | 3.6 | 0.0 | 96.4 |
 | 1,395 | -4,006,623.4 | 36,270 | 1,011,870 | 27.9 | 8,085,786.8 | 8,088,483.7 | 25.0 | 0.7 | 74.3 |
 | 2,789 | -3,963,489.9 | 72,514 | 1,011,870 | 14.0 | 8,072,007.8 | 8,083,203.5 | 86.2 | 4.1 | 9.7 |
Codon (+ Γ4) | 1 | -3,828,351.7 | 81 | 337,290 | 4,164.1 | 7,656,865.4 | 7,656,865.4 | 88.1 | 11.3 | 0.6 |
 | 5 | -3,810,589.3 | 405 | 337,290 | 832.8 | 7,621,988.6 | 7,621,989.6 | 94.3 | 5.1 | 0.7 |
 | 10 | -3,808,198.7 | 810 | 337,290 | 416.4 | 7,618,017.4 | 7,618,021.3 | 93.3 | 5.9 | 0.8 |
 | 56 | -3,802,941.9 | 4,536 | 337,290 | 74.4 | 7,614,955.8 | 7,615,079.5 | 93.0 | 5.2 | 1.7 |
 | 100 | -3,799,324.6 | 8,100 | 337,290 | 41.6 | 7,614,849.2 | 7,615,247.9 | 94.0 | 4.9 | 1.1 |
 | 200 | -3,791,928.7 | 16,200 | 337,290 | 20.8 | 7,616,257.4 | 7,617,892.2 | 91.0 | 8.1 | 1.0 |
 | 558 | -3,766,336.0 | 45,198 | 337,290 | 7.5 | 7,623,068.0 | 7,637,056.1 | 96.7 | 2.9 | 0.3 |
 | 930 | -3,741,173.9 | 75,330 | 337,290 | 4.5 | 7,633,007.8 | 7,676,332.8 | 98.0 | 1.7 | 0.3 |
 | 1,395 | -3,712,084.5 | 112,995 | 337,290 | 3.0 | 7,650,159.0 | 7,764,009.4 | 96.2 | 3.8 | 0.0 |
 | 2,789 | -3,621,322.1 | 225,909 | 337,290 | 1.5 | 7,694,462.2 | 8,610,876.3 | 89.6 | 10.4 | 0.0 |
Amino acid (JTT-F + Γ8) | 1 | -1,905,933.9 | 37 | 337,290 | 9,115.9 | 3,811,941.8 | 3,811,941.8 | 51.6 | 0.2 | 48.2 |
 | 5 | -1,879,320.4 | 185 | 337,290 | 1,823.2 | 3,759,010.8 | 3,759,011.0 | 63.4 | 0.2 | 36.5 |
 | 10 | -1,877,405.7 | 370 | 337,290 | 911.6 | 3,755,551.4 | 3,755,552.2 | 63.9 | 0.3 | 35.9 |
 | 56 | -1,875,094.5 | 2,072 | 337,290 | 162.8 | 3,754,333.0 | 3,754,358.6 | 56.6 | 0.1 | 43.2 |
 | 100 | -1,873,607.4 | 3,700 | 337,290 | 91.2 | 3,754,614.8 | 3,754,696.9 | 58.7 | 0.5 | 40.9 |
 | 200 | -1,870,213.5 | 7,400 | 337,290 | 45.6 | 3,755,227.0 | 3,755,559.0 | 59.8 | 0.2 | 40.1 |
 | 558 | -1,858,842.6 | 20,646 | 337,290 | 16.3 | 3,758,977.2 | 3,761,669.7 | 81.2 | 1.1 | 17.7 |
 | 930 | -1,847,528.8 | 34,410 | 337,290 | 9.8 | 3,763,877.6 | 3,771,696.4 | 81.6 | 6.5 | 11.9 |
 | 1,395 | -1,834,624.0 | 51,615 | 337,290 | 6.5 | 3,772,478.0 | 3,791,129.7 | 87.1 | 10.9 | 2.0 |
 | 2,789 | -1,799,245.4 | 103,193 | 337,290 | 3.3 | 3,804,876.8 | 3,895,855.7 | 93.4 | 6.6 | 0.0 |