From: Rooting the eutherian tree: the power and pitfalls of phylogenomics
Concatenate or separate model | Substitution model | Tree | < ln L > (Δ ln L ± SE) | KH | wSH | BP | #p | AIC |
---|---|---|---|---|---|---|---|---|
Concatenate model | GTR + Γ8 | 1 | -117.2 ± 31.1 | 0.000 | 0.000 | 0.0 |  |  |
 |  | 2 | -147.3 ± 29.7 | 0.000 | 0.000 | 0.0 |  |  |
 |  | 3 | < -4,076,316.3 > |  |  | 100.0 | 26 | 8,152,684.6 |
 | Codon + Γ4 | 1 | < -3,828,351.7 > |  |  | 88.1 | 81 | 7,656,865.4 |
 |  | 2 | -77.8 ± 64.5 | 0.112 | 0.185 | 11.3 |  |  |
 |  | 3 | -142.7 ± 65.0 | 0.014 | 0.026 | 0.6 |  |  |
 | JTT-F + Γ8 | 1 | < -1,905,933.9 > |  |  | 51.6 | 37 | 3,811,941.8 |
 |  | 2 | -84.1 ± 37.4 | 0.014 | 0.028 | 0.2 |  |  |
 |  | 3 | -1.7 ± 41.9 | 0.478 | 0.637 | 48.2 |  |  |
Separate model (among 2,789 genes) | GTR + Γ8 | 1 | < -3,963,489.9 > |  |  | 86.2 | 72,514 | 8,072,007.8 |
 |  | 2 | -117.4 ± 72.3 | 0.050 | 0.092 | 4.1 |  |  |
 |  | 3 | -91.4 ± 72.7 | 0.104 | 0.174 | 9.7 |  |  |
 | Codon + Γ4 | 1 | < -3,621,322.1 > |  |  | 89.6 | 225,909 | 7,694,462.2 |
 |  | 2 | -128.0 ± 103.2 | 0.107 | 0.164 | 10.4 |  |  |
 |  | 3 | -527.9 ± 96.3 | 0.000 | 0.000 | 0.0 |  |  |
 | JTT-F + Γ8 | 1 | < -1,799,245.4 > |  |  | 93.4 | 103,193 | 3,804,876.8 |
 |  | 2 | -134.9 ± 88.5 | 0.064 | 0.112 | 6.6 |  |  |
 |  | 3 | -317.6 ± 85.5 | 0 | 0.000 | 0.0 |  |  |