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Table 2 E-Predict parameters

From: DetectiV: visualization, normalization and significance testing for pathogen-detection microarray data

Parameter

Value

user_wts

MV_72worst_medRaw500_badYdens

norm_opt

Sum

energy_filter

undef

ematrix

22/07/2004

ematrix_norm

Quadratic

ematrix_efilter

30

dist_metric

Pearson Uncentered

iterate

2

top_oligos

5

top_genomes

5

top_fams

5

sort_by

Distance|P value

eclust

None

  1. Parameters used for input into E-Predict.
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Genome Biology

ISSN: 1474-760X

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