In silico* | No. of strains conserved† | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Gene | Location | Conservation in K-12 | Common name/description | CFT073 | UTI89 | 536 | APEC | O157 (8) | O26 (8) | O111 (6) | O103 (6) |
Genes related to adhsion (not fimbrial genes) | |||||||||||
ECs0336 | S-loop20 | Partly conserved | Putative invasin | + | + | + | + | [8] | [8] | [6] | [6] |
ECs0350 | S-loop23 | Absent | HmwA-like protein | - | - | + | - | (7) | 0 | 0 | 0 |
ECs0362 | S-loop24 | Absent | AidA-I adhesin-like protein | - | - | - | - | [8] | [8] | [6] | [6] |
ECs0548 | S-loop43 | Absent | Saa-like protein | - | + | - | + | [8] | 0 | 0 | 0 |
ECs1360 | SpLE1 | Absent | Iha adhesin | + | - | - | - | [8] | [8] | [6] | 2 |
ECs1396 | SpLE1 | Conserved | AidA-I adhesin-like protein | - | - | - | - | (7) | [8] | 0 | [6] |
ECs1772 | Sp9 | Absent | Paa | - | - | - | - | [8] | (7) | [6] | 4 |
ECs2006 | Backbone | Absent | BigA-like protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs2007 | Backbone | Absent | BigB-like protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs2567 | Backbone | Conserved | Putative adhesin | + | + | + | + | [8] | [8] | [6] | [6] |
ECs3860 | SpLE3 | Absent | Efa1 (interrupted) | - | - | - | - | (7) | [8] | [6] | [6] |
ECs3861 | SpLE3 | Absent | Efa1 (partial) | - | - | - | - | (7) | [8] | [6] | [6] |
ECs4559 | SpLE4 (LEE) | Absent | Gamma intimin | - | - | - | - | [8] | 0 | 0 | 0 |
ECs5290 | S-loop288 | Absent | Putative invasin | - | - | - | - | (7) | 0 | 0 | 0 |
Genes confer resistance to host immune response | |||||||||||
ECs0218 | S-loop14 | Absent | IcmF-like protein | - | - | - | - | [8] | [8] | [6] | [6] |
ECs1236 | Sp5 | Absent | Lom | - | - | - | - | 5 | 1 | 2 | 0 |
ECs1312 | SpLE1 | Absent | TraT | - | - | - | - | (7) | (7) | 0 | 3 |
ECs1956 | Sp10 | Absent | IrsA-like protein | - | - | - | + | 5 | 1 | (5) | 1 |
ECs3850 | SpLE3 | Absent | PagC-like protein | - | - | - | - | [8] | 0 | [6] | 2 |
RF001 | Sp5, 8 | Conserved | Bor | + | + | + | + | 6 | [8] | 1 | 5 |
RF098 | Sp4, 10 | Absent | Copper/zinc-superoxide dismutase | - | - | - | - | 4 | 1 | (5) | [6] |
RF115 | Sp3, 4, 8 - 12, 14, 15 | Absent | Lom | - | - | - | + | [8] | [8] | [6] | [6] |
Toxins and activators | |||||||||||
ECs0541 | S-loop42 | Absent | RTX-like protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs0542 | S-loop42 | Absent | RTX-like protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs0814 | Sp3 | Absent | SfpA (systemic factor protein A)-like protein | - | - | - | - | [8] | [8] | [6] | [6] |
ECs1205 | Sp5 | Absent | Shiga toxin 2 subunit A | - | - | - | - | 4 | 1 | 2 | 1 |
ECs1206 | Sp5 | Absent | Shiga toxin 2 subunit B | - | - | - | - | 3 | 1 | 2 | 1 |
ECs1282 | S-loop71 | Absent | Hemagglutinin/hemolysin - related protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs1283 | S-loop71 | Absent | Hemolysin activator - related protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs1382 | SpLE1 | Absent | HecB-like protein | - | - | - | - | 5 | (7) | [6] | 2 |
ECs1652 | Sp8 | Absent | Putative catalase | - | - | - | - | [8] | 0 | 0 | 0 |
ECs1677 | Backbone | Conserved | Hemolysin E | - | - | - | - | [8] | [8] | [6] | [6] |
ECs2973 | Sp15 | Absent | Stx1B | - | - | - | - | 6 | (7) | [6] | [6] |
ECs2974 | Sp15 | Absent | Stx1A | - | - | - | - | 6 | (7) | [6] | [6] |
Regulators | |||||||||||
ECs1274 | s-loop71 | Absent | GrvA | - | - | - | - | [8] | 0 | 0 | 0 |
ECs1388 | SpLE1 | Absent | PchD | + | - | - | + | 4 | (7) | 2 | 2 |
ECs1588 | Sp7 | Absent | PchE | - | - | - | - | (7) | [8] | 0 | 4 |
ECs3105 | Backbone | Conserved | RcsD | + | + | + | + | [8] | [8] | [6] | [6] |
ECs3106 | Backbone | Conserved | RcsB | + | + | + | + | [8] | [8] | [6] | [6] |
ECs3107 | Backbone | Conserved | RcsC | + | + | + | + | [8] | [8] | [6] | [6] |
ECs3720 | ETT2 | Absent | EtrA | - | - | - | - | [8] | [8] | 4 | 4 |
ECs3734 | ETT2 | Absent | EivF | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4577 | SpLE4 (LEE) | Absent | GrlA | - | - | - | - | [8] | [8] | 4 | (5) |
ECs4578 | SpLE4 (LEE) | Absent | GrlR | - | - | - | - | [8] | [8] | 4 | 4 |
ECs4588 | SpLE4 (LEE) | Absent | Ler | - | - | - | - | [8] | [8] | (5) | [6] |
RF132 | Sp4, 11, 14 | Absent | PchA, B, C | - | - | - | - | [8] | (7) | [6] | [6] |
Secretion machineries | |||||||||||
ECs0540 | S-loop42 | Absent | CyaE-like protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs0543 | S-loop43 | Absent | Putative RTX toxin secretion ATP-binding protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs0544 | S-loop44 | Absent | Putative RTX toxin secretion membrane fusion protein | - | - | - | - | [8] | 0 | 0 | 0 |
ECs3716 | ETT2 | Absent | EprK | - | - | - | - | [8] | [8] | (5) | (5) |
ECs3717 | ETT2 | Absent | EprJ | - | - | - | - | [8] | [8] | 4 | (5) |
ECs3718 | ETT2 | Absent | EprI | - | - | - | - | [8] | [8] | (5) | 4 |
ECs3719 | ETT2 | Absent | EprH | - | - | - | - | [8] | [8] | 4 | (5) |
ECs3721 | ETT2 | Absent | EpaS | - | - | - | - | [8] | [8] | (5) | (5) |
ECs3722 | ETT2 | Absent | EpaR2 | - | - | - | - | [8] | [8] | 4 | 4 |
ECs3723 | ETT2 | Absent | EpaR1 | - | - | - | - | [8] | [8] | (5) | 4 |
ECs3724 | ETT2 | Absent | EpaQ | - | - | - | - | [8] | [8] | (5) | (5) |
ECs3725 | ETT2 | Absent | EpaP | - | - | - | - | [8] | [8] | 4 | 4 |
ECs3726 | ETT2 | Absent | EpaO | - | - | - | - | [8] | 1 | 0 | 2 |
ECs3727 | ETT2 | Absent | EivJ | - | - | - | - | [8] | 0 | 0 | 0 |
ECs3729 | ETT2 | Absent | EivI | - | - | - | - | [8] | 0 | 0 | 0 |
ECs3730 | ETT2 | Absent | EivC | - | - | - | - | [8] | 0 | 0 | 0 |
ECs3731 | ETT2 | Absent | EivA | - | - | - | - | [8] | 0 | 0 | 0 |
ECs3732 | ETT2 | Absent | EivE | - | - | - | - | [8] | 0 | 0 | 0 |
ECs3733 | ETT2 | Absent | EivG | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4551 | SpLE4 (LEE) | Absent | Orf29 | - | - | - | - | [8] | 3 | [6] | (5) |
ECs4552 | SpLE4 (LEE) | Absent | EscF | - | - | - | - | [8] | [8] | [6] | [6] |
ECs4553 | SpLE4 (LEE) | Absent | CesD2 | - | - | - | - | [8] | [8] | [6] | [6] |
ECs4555 | SpLE4 (LEE) | Absent | EspD | - | - | - | - | [8] | 0 | 0 | 1 |
ECs4556 | SpLE4 (LEE) | Absent | EspA | - | - | - | - | [8] | 1 | 0 | 1 |
ECs4557 | SpLE4 (LEE) | Absent | SepL | - | - | - | - | [8] | [8] | [6] | (5) |
ECs4558 | SpLE4 (LEE) | Absent | EscD | - | - | - | - | [8] | 0 | 3 | 2 |
ECs4560 | SpLE4 (LEE) | Absent | CesT | - | - | - | - | [8] | 6 | [6] | [6] |
ECs4563 | SpLE4 (LEE) | Absent | CesF | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4565 | SpLE4 (LEE) | Absent | SepQ | - | - | - | - | [8] | 0 | 0 | 1 |
ECs4566 | SpLE4 (LEE) | Absent | Orf16 | - | - | - | - | [8] | 0 | (5) | 0 |
ECs4567 | SpLE4 (LEE) | Absent | Orf15 | - | - | - | - | [8] | 6 | (5) | 4 |
ECs4568 | SpLE4 (LEE) | Absent | EscN | - | - | - | - | [8] | 4 | (5) | 3 |
ECs4569 | SpLE4 (LEE) | Absent | EscV | - | - | - | - | [8] | 6 | (5) | 2 |
ECs4570 | SpLE4 (LEE) | Absent | Orf12 | - | - | - | - | [8] | 4 | 4 | 2 |
ECs4572 | SpLE4 (LEE) | Absent | Rorf8 | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4573 | SpLE4 (LEE) | Absent | EscJ | - | - | - | - | [8] | 3 | 4 | 2 |
ECs4574 | SpLE4 (LEE) | Absent | SepD | - | - | - | - | [8] | 0 | 4 | 2 |
ECs4575 | SpLE4 (LEE) | Absent | EscC | - | - | - | - | [8] | [8] | [6] | 4 |
ECs4576 | SpLE4 (LEE) | Absent | CesD | - | - | - | - | [8] | 5 | 4 | 3 |
ECs4579 | SpLE4 (LEE) | Absent | Rorf3 | - | - | - | - | [8] | 1 | 4 | 2 |
ECs4580 | SpLE4 (LEE) | Absent | EscU | - | - | - | - | [8] | (7) | (5) | 4 |
ECs4581 | SpLE4 (LEE) | Absent | EscT | - | - | - | - | [8] | (7) | 4 | 3 |
ECs4582 | SpLE4 (LEE) | Absent | EscS | - | - | - | - | [8] | [8] | (5) | (5) |
ECs4583 | SpLE4 (LEE) | Absent | EscR | - | - | - | - | [8] | [8] | 4 | (5) |
ECs4584 | SpLE4 (LEE) | Absent | Orf5 | - | - | - | - | [8] | [8] | [6] | (5) |
ECs4585 | SpLE4 (LEE) | Absent | Orf4 | - | - | - | - | [8] | [8] | 4 | (5) |
ECs4586 | SpLE4 (LEE) | Absent | Orf3 | - | - | - | - | [8] | 6 | [6] | (5) |
ECs4587 | SpLE4 (LEE) | Absent | Orf2 | - | - | - | - | [8] | 3 | 1 | 2 |
T3SS effectors (LEE encoded) | |||||||||||
ECs4550 | SpLE4 (LEE) | Absent | EspF1 | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4554 | SpLE4 (LEE) | Absent | EspB | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4561 | SpLE4 (LEE) | Absent | Tir | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4562 | SpLE4 (LEE) | Absent | Map | - | - | - | - | [8] | 0 | 0 | 2 |
ECs4564 | SpLE4 (LEE) | Absent | EspH | - | - | - | - | [8] | [8] | 0 | [6] |
ECs4571 | SpLE4 (LEE) | Absent | SepZ | - | - | - | - | [8] | 0 | 0 | 0 |
ECs4590 | SpLE4 (LEE) | Absent | EspG | - | - | - | - | [8] | 1 | 3 | 2 |
T3SS effectors (non-LEE encoded) | |||||||||||
ECs0061 | Backbone | Conserved | EspY1 | - | - | - | - | [8] | 0 | 0 | 0 |
ECs0847 | Sp3 | Absent | NleC | - | - | - | - | [8] | (7) | 1 | 1 |
ECs0848 | Sp3 | Absent | NleH1-1 | - | - | - | - | [8] | 1 | 0 | 3 |
ECs0850 | Sp3 | Absent | NleD | - | - | - | - | [8] | 0 | 0 | 4 |
ECs0876 | S-loop57 | Absent | EspX2 | - | - | - | - | [8] | 0 | 0 | 0 |
ECs1127 | Sp4 | Absent | EspK | - | - | - | - | [8] | [8] | [6] | [6] |
ECs1560 | Sp6 | Absent | EspX7 | - | - | - | - | [8] | (7) | [6] | [6] |
ECs1561 | Sp6 | Absent | EspN | - | - | - | - | [8] | (7) | (5) | [6] |
ECs1567 | Sp6 | Absent | EspO1-1 | - | - | - | - | [8] | 0 | [6] | 1 |
ECs1568 | Sp6 | Absent | EspR1 | - | - | - | - | [8] | [8] | [6] | [6] |
ECs1810 | Sp9 | Absent | NleG2-1 | - | - | - | - | (7) | (7) | [6] | 1 |
ECs1811 | Sp9 | Absent | NleG2-1 | - | - | - | - | (7) | (7) | 0 | 2 |
ECs1812 | Sp9 | Absent | NleA/EspI | - | - | - | - | (7) | (7) | 0 | 1 |
ECs1814 | Sp9 | Absent | NleH1-2 | - | - | - | - | 4 | 6 | [6] | [6] |
ECs1815 | Sp9 | Absent | NleF | - | - | - | - | 4 | 6 | [6] | [6] |
ECs1824 | Sp9 | Absent | NleG | - | - | - | - | [8] | (7) | [6] | 0 |
ECs1825 | Sp9 | Absent | EspM1 | - | - | - | - | [8] | (7) | [6] | 0 |
ECs2226 | Sp12 | Absent | NleG7 | - | - | - | - | [8] | [8] | [6] | [6] |
ECs2714 | Sp14 | Absent | EspJ | - | - | - | - | [8] | 0 | 0 | 1 |
ECs3485 | Sp17 | Absent | EspM2 | - | - | - | - | [8] | (7) | [6] | 2 |
ECs3486 | Sp17 | Absent | NleG8-2 | - | - | - | - | [8] | (7) | [6] | 3 |
ECs3487 | Sp17 | Absent | EspW | - | - | - | - | [8] | (7) | [6] | 3 |
ECs3855 | SpLE3 | Absent | EspL2 | - | - | - | - | [8] | [8] | [6] | [6] |
ECs3857 | SpLE3 | Absent | NleB1 | - | - | - | - | [8] | [8] | [6] | [6] |
ECs3858 | SpLE3 | Absent | NleE | - | - | - | - | [8] | [8] | [6] | [6] |
ECs4653 | S-loop252 | Absent | EspY4 | - | - | - | - | [8] | 0 | 0 | 0 |
RF004 | Sp4, 14 | Absent | Tccp, TccP2 | - | - | - | - | [8] | 1 | 2 | 4 |
RF067 | Sp10, 11 | Absent | NleG2-2, NleG2-3 | - | - | - | - | [8] | [8] | [6] | 4 |
RF069 | Sp10, 11, 17 | Absent | NleG6-1, NleG6-2, NleG6-3 | - | - | - | - | [8] | (7) | [6] | 3 |
RF070 | Sp10, 11 | Absent | NleG5-1, NleG5-2 | - | - | - | - | [8] | (7) | (5) | 1 |
Plasmid encoded | |||||||||||
pO157_01 | pO157 | Absent | Metalloprotease StcE | - | - | - | - | [8] | 0 | 0 | 0 |
pO157_02 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_03 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_04 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_05 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 0 | 0 | 2 |
pO157_06 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 2 | 0 | 3 |
pO157_07 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_08 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 0 | 0 | 3 |
pO157_09 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_10 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 0 | 0 | 1 |
pO157_11 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_12 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 1 | 0 | 3 |
pO157_13 | pO157 | Absent | Type II secretion pathway related protein | - | - | - | - | [8] | 0 | 0 | 1 |
pO157_14 | pO157 | Absent | Type II secretion pathway related protein | - | - | + | + | [8] | 0 | 0 | 1 |
pO157_17 | pO157 | Absent | Hemolysin C | - | - | - | - | [8] | [8] | (5) | 3 |
pO157_18 | pO157 | Absent | Hemolysin A | - | - | - | - | [8] | (7) | (5) | 4 |
pO157_19 | pO157 | Absent | Hemolysin B | - | - | - | - | [8] | (7) | (5) | 4 |
pO157_20 | pO157 | Absent | Hemolysin D | - | - | - | - | [8] | (7) | (5) | 4 |
pO157_39 | pO157 | Absent | Hemagglutinin-associated protein | - | + | - | - | [8] | 5 | 0 | 1 |
pO157_59 | pO157 | Absent | Putative adherence factor, Efa1 homolog | - | - | - | - | [8] | 3 | 0 | (5) |
pO157_76 | pO157 | Absent | KatP | - | - | - | - | 6 | 6 | (5) | 2 |
pO157_79 | pO157 | Absent | EspP | - | - | - | - | [8] | (7) | [6] | 4 |
pO157_80 | pO157 | Absent | Putative polysaccharide deacetylase (ecf1) | - | - | - | - | [8] | (7) | (5) | 4 |
pO157_81 | pO157 | Absent | Putative LPS-1,7-N-acetylglucosamine transferase (ecf2) | - | - | - | - | [8] | (7) | (5) | 4 |
pO157_82 | pO157 | Absent | Putative membrane protein (ecf3) | - | - | - | - | [8] | (7) | (5) | 4 |
pO157_83 | pO157 | Absent | Putative lipid A myristoyl transferase, MsbB2 (ecf4) | - | - | - | - | [8] | (7) | (5) | 4 |