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Table 5 Human-opossum TFBS conservation dependency on transcription factor identity

From: Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome

Factor

Motif

Human versus opossum

 

IC

Length

Detectable

% conserved

p value

Over/under

HMG

8.43

9

7

100.00%

0.0020

Over*

p50

15.63

11

8

75.00%

0.0470

Over

MITF

N/A

N/A

10

70.00%

0.0487

Over

CREB

11.52

8

13

69.23%

0.0287

Over

E2F-1

10.17

8

10

60.00%

0.1228

 

GR

7.06

6

7

57.14%

0.2056

 

HNF-1α

N/A

N/A

7

57.14%

0.2056

 

POU1F1a

7.57

5

9

55.56%

0.1794

 

E2F

13.84

8

11

54.55%

0.1594

 

AP-1

9.44

7

24

50.00%

0.1112

 

ATF-2

N/A

N/A

8

50.00%

0.2422

 

USF1

10.37

6

8

50.00%

0.2422

 

IPF1

N/A

N/A

9

44.44%

0.2565

 

HIF-1

11.00

11

7

42.86%

0.2938

 

p53

25.74

18

16

37.50%

0.1949

 

HNF-1α-A

13.66

10

8

37.50%

0.2763

 

NF-κB

13.34

10

11

36.36%

0.2321

 

Sp1

9.22

8

86

29.07%

0.0049

Under

AP-2αA

N/A

N/A

23

26.09%

0.0581

 

C/EBPα

11.12

9

16

25.00%

0.0886

 

Egr-1

13.12

9

8

25.00%

0.1961

 

c-Myb

14.15

11

11

18.18%

0.0775

 

ER-α

N/A

N/A

9

11.11%

0.0521

 

GATA-1

5.57

4

9

11.11%

0.0521

 

Gfi1

7.60

4

11

0.00%

0.0028

Under

AhR

8.62

6

7

0.00%

0.0238

Under

TCF-4

12.54

7

7

0.00%

0.0238

Under

  1. See Table 5 footnote for details.