Table 1 Scaffolds from the current Anopheles gambiae genome golden path
No. | Scaffold accession number | Full length of scaffold* | Scaffold begin | Scaffold end | Assembly status to the next scaffold | BAC clones crossing gap between current and next scaffold |
|---|---|---|---|---|---|---|
| Â | X chromosome | Telomere end | Â | Â | Â | Â |
1 | AAAB01008846 | 11308833 | 4C | 1D | Not joined | Â |
2 | AAAB01008847 | 3715079 | 1D | 5A | Not joined | Â |
3 | AAAB01008963 | 2230633 | 5A | 5C | Not joined | Â |
4 | AAAB01008811 | 3062431 | 5C | 6 | Not joined | Â |
5 | AAAB01008973 | 600295 | 6 | 6 | Not joined | Â |
6 | AAAB01008958 | 589940 | 6 | 6 | Not joined | Â |
7 | AAAB01008852 | 409660 | 6 | 6 | Not joined | Â |
8 | AAAB01008975 | 935344 | 6 | 6 | Not joined | Â |
9 | AAAB01008885 | 267815 | 6 | 6 | Not joined | Â |
10 | AAAB01008967 | 438965 | 6 | 6 | Not joined | Â |
11 | AAAB01007622 | 14705 | 6 | 6 | Not joined | Â |
12 | AAAB01008976 | 589797 | 6 | 6 | Not joined | Â |
13 | AAAB01008861 | 109611 | 6 | 6 | Not joined | Â |
| Â | X chromosome | Centromere end | Â | Â | Â | Â |
| Â | 2R chromosome | Telomere end | Â | Â | Â | Â |
14 | AAAB01008987 | 16222597 | 10D | 7A | Bridged | 17O20 |
15 | AAAB01008799 | 2774677 | 11B | 10D | Not joined | Â |
16 | AAAB01008859 | 12516315 | 13E | 11B | Bridged | 122O11 |
17 | AAAB01008879 | 2921310 | 14A | 14C | Joined | Â |
18 | AAAB01008794 | 932688 | 14D | 14D | Joined | Â |
19 | AAAB01008982 | 1015562 | 14D | 14E | Joined and bridged | 155O10 |
20 | AAAB01008904 | 1759265 | 14E | 15B | Joined | Â |
21 | AAAB01008851 | 2082253 | 15C | 15C | Joined and bridged | 179J17 |
22 | AAAB01008820 | 590116 | 15D | 15C | Joined and bridged | 30L16 |
23 | AAAB01008888 | 3396474 | 15D | 16A | Not joined | Â |
24 | AAAB01008844 | 2866027 | 16B | 16D | Joined and bridged | 21H06 |
25 | AAAB01008805 | 646796 | 16D | 16D | Not joined | Â |
26 | AAAB01008862 | 212521 | 16D | 16D | Not joined | Â |
27 | AAAB01008978 | 1934381 | 16D | 17B | Bridged | 124P12 |
28 | AAAB01008817 | 1590424 | 17C | 17C | Bridged | 16N20, 105N12 |
29 | AAAB01008880 | 4233641 | 18A | 18C | Not joined | Â |
30 | AAAB01008898 | 4120773 | 18C | 19C | Bridged | 105P15 |
31 | AAAB01008952 | 1118246 | 19D | 19C | Not joined | Â |
32 | AAAB01008961 | 516376 | 19D | 19D | Bridged | 174H20, 127O12 |
33 | AAAB01008850 | 840256 | 19D | 19D | Bridged | 07F16 |
34 | AAAB01008977 | 457753 | 19D | 19D | Not joined | Â |
35 | AAAB01008949 | 335163 | 19E | 19E | Not joined | Â |
36 | AAAB01008897 | 259841 | 19E | 19E | Not joined | Â |
| Â | 2R chromosome | Centromere end | Â | Â | Â | Â |
| Â | 2L chromosome | Centromere end | Â | Â | Â | Â |
37 | AAAB01008942 | 373146 | 20A | 20A | Not joined | Â |
38 | AAAB01008026 | 124951 | 20A | 20A | Not joined | Â |
39 | AAAB01008864 | 318965 | 20B | 20B | Not joined | Â |
40 | AAAB01008968 | 3184012 | 20D | 20B | Bridged | 01I16, 01J12 |
41 | AAAB01008905 | 1027887 | 20D | 20D | Not joined | Â |
42 | AAAB01008948 | 3345744 | 21A | 21B | Not joined | Â |
43 | AAAB01008456 | 41134 | 21B | 21B | Not joined | Â |
44 | AAAB01008827 | 28099 | 21B | 21B | Not joined | Â |
45 | AAAB01008900 | 4906461 | 21C | 21F | Not joined | Â |
46 | AAAB01008810 | 494023 | 21F | 22A | Not joined | Â |
47 | AAAB01008960 | 23099915 | 22A | 25D | Not joined | Â |
48 | AAAB01008807 | 12309988 | 28D | 25D | Not joined | Â |
| Â | 2Lchromosome | Telomere end | Â | Â | Â | Â |
| Â | 3R chromosome | Telomere end | Â | Â | Â | Â |
49 | AAAB01008964 | 12399987 | 30E | 29A | Joined | Â |
50 | AAAB01008944 | 6709423 | 30E | 31D | Joined | Â |
51 | AAAB01008984 | 12483120 | 32A | 33D | Joined and bridged | 11E04 |
52 | AAAB01008835 | 1771096 | 33D | 34A | Joined | Â |
53 | AAAB01008797 | 1002333 | 34A | 34B | Not joined | Â |
54 | AAAB01008839 | 2408169 | 34C | 34B | Joined and bridged | 08B11 |
55 | AAAB01008980 | 16417966 | 34C | 37D | Not joined | Â |
56 | AAAB01008822 | 56627 | 37D | 37D | Not joined | Â |
57 | AAAB01008971 | 377729 | 37D | 37D | Not joined | Â |
58 | AAAB01008943 | 173243 | 37D | 37D | Not joined | Â |
| Â | 3R chromosome | Centromere end | Â | Â | Â | Â |
| Â | 3L chromosome | Centromere end | Â | Â | Â | Â |
59 | AAAB01008981 | 219224 | 38A | 38A | Not joined | Â |
60 | AAAB01008985 | 236235 | 38A | 38A | Not joined | Â |
61 | AAAB01008972 | 744379 | 38A | 38A | Not joined | Â |
62 | AAAB01008957 | 222192 | 38A | 38A | Not joined | Â |
63 | AAAB01008849 | 2994010 | 38C | 38B | Not joined | Â |
64 | AAAB01008906 | 127247 | 38C | 38C | Not joined | Â |
65 | AAAB01008795 | 347814 | 38C | 38C | Not joined | Â |
66 | AAAB01008933 | 2255294 | 38C | 39B | Not joined | Â |
67 | AAAB01008838 | 221210 | 39A | 39A | Not joined | Â |
68 | AAAB01008796 | 270581 | 39B | 39B | Bridged | 22E23, 119N12 |
69 | AAAB01008848 | 1927899 | 39B | 39C | Joined and bridged | 133F8, 12F24 |
70 | AAAB01008979 | 1577277 | 40A | 39C | Joined | Â |
71 | AAAB01008951 | 359421 | 40A | 40A | Joined and bridged | 02H06 |
72 | AAAB01008823 | 3392972 | 41A | 40B | Joined and bridged | 04P06, 10C06, 08F18 |
73 | AAAB01008793 | 402616 | 41A | 41A | Joined and bridged | 160H13 |
74 | AAAB01008804 | 907607 | 41B | 41A | Joined | Â |
75 | AAAB01008816 | 6058108 | 42B | 41B | Not joined | Â |
76 | AAAB01008966 | 3863510 | 43B | 42C | Joined | Â |
77 | AAAB01008956 | 1048260 | 43B | 43B | Joined and bridged | 128N23 |
78 | AAAB01008090 | 381451 | 43B | 43B | Joined and bridged | 131N20, 143K17, 23C10 |
79 | AAAB01008834 | 2541584 | 43D | 43B | Bridged | 12N18, 08K01, 102F22, 172A24, 19C24, 23K03 |
80 | AAAB01008986 | 12698247 | 46D | 43D | Not joined | Â |
| Â | 3L chromosome | Telomere end | Â | Â | Â | Â |