Figure 5

Three types of mRNA transcript regulation. (a) Type I: transcription initiation level regulation - genes that contain promoter regulatory motif(s) (blue circle) in their promoter according to Harbison et al.'s data [25], but do not contain any of the stability-associated motifs from the present analysis. (b) Type II: transcript degradation level regulation - genes that contain stability-associated motif(s) (red oval) from the present analysis but do not contain any of the promoter motifs from [25]. (c) Type III: combined transcription initiation and transcript degradation level regulation - genes that contain both promoter motif(s) and stability-associated motif(s). The figure shows the number of genes in each regulation type and the enriched biological processes that were found for them. Enrichment was calculated as a hypergeometric p-value using GO annotations.The enriched processes that were found significant after FDR (q-value = 0.1) are stated for types I and III. *In type II only borderline significance was found, (no term passed FDR) and those are reported along with their p-values.