Table 6 Pathways (including superpathways) that are common to human, bacteria and plant PGDBs
From: Computational prediction of human metabolic pathways from the complete human genome
Class | Subclass | Pathway |
|---|---|---|
Biosynthesis | Polyamines | Betaine biosynthesis |
| Â | Â | Polyamine biosynthesis |
| Â | Fatty acids and lipids | Phospholipid biosynthesis |
| Â | Â | Fatty acid biosynthesis - initial steps |
| Â | Â | Fatty acid elongation - saturated |
| Â | Cofactors, prosthetic groups, electron carriers | Pyridine nucleotide biosynthesis |
| Â | Â | Thioredoxin pathway |
| Â | Â | Glutathione biosynthesis |
| Â | Â | Pantothenate and coenzyme A biosynthesis |
| Â | Â | Pyridoxal 5'-phosphate salvage pathway |
| Â | Â | Polyisoprenoid biosynthesis |
| Â | Â | FormylTHF biosynthesis |
| Â | Cell structures | Colanic acid building blocks biosynthesis |
| Â | Â | GDP-mannose metabolism |
| Â | Carbohydrates | Gluconeogenesis |
| Â | Â | Trehalose degradation - low osmolarity |
| Â | Aminoacyl-tRNAs | tRNA charging pathway |
| Â | Amino acid biosynthesis | Proline biosynthesis I |
| Â | Â | Glycine biosynthesis I |
| Â | Â | Serine biosynthesis |
Degradation | Sugars and polysaccharides | Glucose 1-phosphate metabolism |
| Â | Â | Galactose metabolism |
| Â | Â | Trehalose degradation - low osmolarity |
| Â | Â | Glycogen degradation |
| Â | Â | Ribose degradation |
| Â | Other degradation | Removal of superoxide radicals |
| Â | Nucleosides and nucleotides | (Deoxy)ribose phosphate metabolism |
| Â | Fatty acids | Fatty acid oxidation pathway |
| Â | Carboxylates, other | Acetate degradation |
| Â | Amino acids, amines | L-serine degradation |
| Â | Alcohols | Glycerol metabolism |
Energy metabolism | Â | Pyruvate dehydrogenase |
| Â | Â | TCA cycle - aerobic respiration |
| Â | Â | Glycolysis |
| Â | Â | Oxidative branch of the pentose phosphate pathway |
| Â | Â | Nonoxidative branch of the pentose phosphate pathway |