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Table 8 Co-linkage analysis of genes with gene-centric vocabularies

From: TXTGate: profiling gene groups with text-based information

Gene name

Description

hnpcc

Hereditary nonpolyposis colon cancer

apc

Adenomatous polyposis coli protein

p53

Cellular tumor antigen P53 (tumor suppressor P53)

mlh1

DNA mismatch repair protein MLH1 (mutL protein homolog 1)

muts

E. coli mismatch repair gene mutS

p21

Cyclin-dependent kinase inhibitor 1A

msh2

DNA mismatch repair protein MSH2 (mutS protein homolog 2)

bax

BAX protein, cytoplasmic isoform delta

wnt

Wingless-type MMTV integration site family members

pms2

DNA mismatch repair protein PMS2

src

Proto-oncogene tyrosine protein kinase SRC

dcc

Tumor suppressor protein DCC precursor (colorectal cancer suppressor)

mcc

Colorectal mutant cancer protein MCC

braf

Proto-oncogene serine/threonine protein kinase B-RAF

fgfr3

Fibroblast growth factor receptor 3 precursor

hcc

Hepatocellular carcinoma

dra

Chloride anion exchanger DRA

axin2

AXIS inhibition protein 2

pms1

DNA mismatch repair protein PMS1

abl

Abelson murine leukemia viral oncogene homolog 1

bub1

Mitotic checkpoint serine/threonine protein kinase BUB1

ptp

Protein tyrosine phosphatase family

bcl10

B cell lymphoma/leukemia 10

ptp_pest

Protein tyrosine phosphatase family with C-terminal PEST-motif

prlts

PDGF-receptor beta-like tumor suppressor

  1. This table shows the top-25 colinked gene symbols in the pool of abstracts of the colon and colorectal cancer case. Genes that were not in the query list are indicated in bold.