Table 5 TXTGate profiling of clusters a, b, c, and d from Chaussabel and Sher [6] (GO vocabulary)
From: TXTGate: profiling gene groups with text-based information
Gene symbol | Cluster terms in [6] | Terms from TXTGate | Â | |
|---|---|---|---|---|
Cluster a | LPL | Lipoprotein | Â | lipoprotein |
| Â | CD36L1 | Density | Â | lipas |
| Â | LDLR | Cholesterol | Â | ldl |
| Â | Â | Lipid | Â | ldl_receptor |
| Â | Â | Adipose | Â | cholesterol |
| Â | Â | Â | Â | hdl |
| Â | Â | Â | Â | scaveng_receptor |
| Â | Â | Â | Â | high_densiti_lipoprotein |
| Â | Â | Â | Â | low_densiti_lipoprotein_receptor |
| Â | Â | Â | Â | low_densiti_lipoprotein |
Cluster b | UPA | Invasive | Collagenase | metalloproteinas |
| Â | PLAUR | Invasion | Collagen | matrix |
| Â | SERPIN | Metastasis | Matrix | metalloendopeptidas |
| Â | MMP1 | UPAR | MMP | collagenas |
| Â | MMP10 | UPA | Metalloproteinase | extracellular_matrix |
| Â | MMP14 | Plasminogen | Molecule-1 | alpha |
| Â | SPARC | Urokinase-type | Adhesion | upar |
| Â | Â | Urokinase | Vascular | plasminogen_activ |
| Â | Â | Plasmin | Endothelial | interstiti |
| Â | Â | Activator | Â | invasion |
Cluster c | AMPD3 | Adenosine | Â | purinerg |
| Â | ADA | A2A | Â | adenosin |
| Â | ADORA2A | A1 | Â | deaminas |
| Â | ADORA3 | Antagonist | Â | p2 |
| Â | P2RX | Agonist | Â | p2x |
| Â | P2RX1 | NM | Â | p1 |
| Â | P2RX7 | Â | Â | agonist |
| Â | Â | Â | Â | receptor |
| Â | Â | Â | Â | adenosin_receptor |
| Â | Â | Â | Â | ada |
Cluster d | IP10 | Interferon | Â | tumor_necrosi_factor |
| Â | MIP1A | IFN-alpha | Â | cytokin |
| Â | MIP1B | IFN | Â | induc |
| Â | IL8 | Interferon-gamma | Â | interferon |
| Â | STAT4 | IFN-gamma | Â | inflammatori |
| Â | IL12B | Inducible | Â | antigen |
| Â | TNFRSF9 | Â | Â | lymphocyt_activ |
| Â | TNFSF9 | Â | Â | stimul |
| Â | SLAM | Â | Â | chemokin |
| Â | TNFRSF5 | Â | Â | monocyt |
| Â | CD83 | Â | Â | Â |