Table 3 Candidate binding sites for the ferric uptake regulator FUR
From: Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria
Gene | Operon | Function | Site | Position* | Score |
|---|---|---|---|---|---|
Geobacter sulfurreducens PCA | |||||
381665 | Fur | Ferric uptake regulator | ATGAtAtTCAcTTTCAg | -31 | 5.25 |
381666 | feoB1 - R | Fe2+ transporter | cTGAAAgTGATTTTCAc | -192 | 5.18 |
383594 | genX*-genY* | Cytochrome c family protein, putative | gTGAAAAaCATTTTCAa | -65 | 5.08 |
383590 | X-feoA-feoA-feoB2 | Porin, Fe2+ transporter | tTGAAAATGgaaTTCAT | -82 | 5.07 |
Geobacter metallireducens | |||||
379927 | Fur | Ferric uptake regulator | tTGAAAATCAcTTTCAg | -30 | 5.54 |
379928 | feoB1 - R | Fe2+ transporter | tTGAAAgTGAaTaTCAa | -48 | 5.33 |
378774 | psp* | Porin? | tTGAAAAaGAcTTTCAT | -259 | 5.28 |
ATGAAtATGAaTTTCAa | -160 | 5.35 | |||
Desulfuromonas species | |||||
392427 | fur2-feoB1 - R | Fe regulator, Fe2+ transporter | tTGAAAATCATTTTCAg | -34 | 5.72 |
390939 | psp* | Porin? | tTGAtAATGgcTTTCAT | -139 | 5.22 |
cTGAAAAcGATTTTCAT | -86 | 5.46 | |||
391943 | fur1 | Ferric uptake regulator | tTGAAcATCATTTTCAT | -37 | 5.44 |
387887 | feoA-feoB4 | Fe2+ transporter | ATGAAAAcGAaTTTCAT | 93 | 5.43 |
tTGAtAAaGAcTTTCAT | 39 | 5.12 | |||
391875 | genY*(N) | tTGAAAAcGgTTTTCAT | -105 | 5.28 | |
389803 | feoA-feoB2 | Fe2+ transporter | cTGAAAAcCgTTTTCAa | -39 | 5.16 |
392265 | feoA-feoB3 | Fe2+ transporter | ATGAAAtaCAcTTTCAa | -54 | 5.13 |
Desulfovibrio vulgaris | |||||
209207 | ? | tTGAAAATtATTTTCAa | -35 | 5.42 | |
ATtAtttTCAaTaTCAg | -29 | 4.06 | |||
206189 | gdp* | GGDEF domain protein | tTGActtTGAaaaTCAT | -36 | 4.04 |
tTGAAAATCATaaTCAa | -30 | 5.32 | |||
208071 | feoA-feoA-feoB | Fe2+ transporter | ATaAActTGAcaaTCAT | -99 | 3.91 |
tTGAcAATCATTTTCAT | -93 | 5.18 | |||
207866 | foxR-pqqL*-atpX*-... | Regulator, Zn-dependent peptidase, ABC operon | tTGActtTGATTTTCAc | -195 | 4.31 |
tTGAtttTCAcTTTCAT | -189 | 5.01 | |||
209238 | genY*(C)-genZ* | ? | tTGAcAtTGATTTTCgT | -55 | 4.31 |
tTGAtttTCgTTTTCAa | -49 | 4.89 | |||
208179 | fld* | Flavodoxin | tTGAAAAcaAaaaTCAa | -182 | 4.49 |
AcaAAAATCAaTTTCAa | -176 | 4.25 | |||
208641 | hdd* | HD-domain protein | tTGAcAATGATTTTCtT | -93 | 4.46 |
ATGAtttTCtTTTTCAa | -87 | 4.81 | |||
208856 | Has P-type ATPase/hydrolase domains | tTGAtttaGATTTTCAa | -87 | 4.79 | |
taGAtttTCAaTTTCAg | -81 | 4.20 | |||
tTcAAttTCAgTaTCAa | -75 | 3.82 | |||
Desulfovibrio desulfuricans G20 | |||||
395878 | fur3 | Ferric uptake regulator | ATGAAAATaATTTTCAT | -77 | 5.46 |
393004 | pqqL*-atpX*-... | Zn-dependent peptidase, ABC operon | ATGAAAATaAaTTTCAT | -54 | 5.31 |
ATaAAttTCATTTTCAT | -48 | 4.65 | |||
392971 | 392971-70-69 | MoxR-like ATPase, CoxE-like protein | cTGAAAtTGgTTTTCAa | -99 | 5.29 |
tTGgtttTCAaTaTCAg | -93 | 4.24 | |||
tTGAAAATGAaaTTtAT | -30 | 4.63 | |||
ATGAAAtTtATagTCAg | -24 | 4.19 | |||
393146 | genY*(C)-genZ* | ? | tTGAcAtTGATTTTCAT | -84 | 5.03 |
tTGAtttTCATTTTCAc | -78 | 4.81 | |||
393462 | fld* | Flavodoxin | tTGAcAATGAaTTTCAT | -263 | 5.03 |
ATGAAttTCATTTTCAc | -257 | 4.99 | |||
394236 | feoA-feoB | Fe2+ transporter | ATGAgAAgGATTTTCAa | -83 | 5.00 |
AgGAtttTCAaTTTCAc | -77 | 3.96 | |||
394235 | feoA3 | Fe2+ transporter | AgGAActTGAcaaTCAT | -60 | 3.91 |
tTGAcAATCATTcTCAT | -54 | 4.72 | |||
393956 | gdp* | GGDEF domain protein | tTGAtttTGAgTTTCAT | -122 | 4.56 |
tTGAgttTCATaTTCAT | -116 | 4.55 | |||
395154 | FoxR | AraC-type regulator | tTGAcAtTGAaaaTCAT | -189 | 4.38 |
tTGAAAATCATTTTCgc | -183 | 4.74 | |||
394231 | pep*-fur1 | Zn-dependent peptidase, Fe regulator | tTcAgAcTGgTTTTCAT | -281 | 3.75 |
cTGgtttTCATTaTCAT | -275 | 4.41 | |||
395541 | hdd* | HD-domain protein | gTGAtAtTGAaaTTCtT | -105 | 3.96 |
tTGAAAtTCtTTaTCgc | -99 | 4.05 | |||
395164 | fepA-feoA2-feoB2 | Outer membrane receptor, Fe-transporter | cTGAtAAaGAaacTCAc | 105 | 3.87 |
AaGAAAcTCAcTaTCAg | 111 | 4.05 | |||