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Table 4 Expression patterns obtained by in situ hybridization

From: An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

Name

GenBank accession number

Pattern

Evidence

Chromosome

Comments

HDC00027

BK003260

Ectoderm

ag

2L

-

HDC00627

BK003299

Ectoderm

-

2L

-

HDC00658

BK003302

Cellular blastoderm subset, salivary glands

-

2L

-

HDC00966

BK003326

Cellular blastoderm subset

-

2L

Intron CG11030

HDC00979

BK003327

Yolk nuclei

-

2L

-

HDC02005

BK003369

Maternal, subset of cells, embryonic large intestine

dp

2L

-

HDC02009

BK003370

Protocerebrum primordium, trunk mesoderm primordium

dp

2L

-

HDC02141

BK003388

Embryonic gut, cells in the head (stage 10/11)

-

2L

-

HDC02262

BK003403

Weak signal

dp

2L

-

HDC02272

BK003405

Weak signal

dp

2L

-

HDC02494

BK003424

Mesoderm anlage

dp

2L

Intron CG15288

HDC02527

BK003429

Salivary glands

dp

2L

-

HDC02528

BK003430

Protocerebrum primordium, anterior midgut primordium

dp

2L

-

HDC02634

BK003455

Cellular blastoderm subset

dp

2L

-

HDC02764

BK003493

Cellular blastoderm, ubiquitous, salivary glands

dp, EST

2L

Intron CG4838

HDC03057

BK003539

Maternal, blastoderm, ubiquitous, gut

dp, EST

2L

Intron CG5803 (overlap)

HDC03960

BK003614

Trunk mesoderm anlage, head mesoderm primordium

dp

2R

Opposite strand to CG17921 (overlap)

HDC04256

BK003630

Subset of mesoderm, gonads

dp

2R

-

HDC05090

BK003664

Subset of cells (procephalic ectoderm primordium?), midgut

-

2R

-

HDC05183

BK003670

Ubiquitous

dp

2R

-

HDC05573

BK003699

Midgut, central nervous system

dp, EST

2R

-

HDC06000

BK003754

Cellular blastoderm excluding ventral structures

dp

2R

Intron CG12369, same staining as HDC05999

HDC06241

BK003785

Ventral ectoderm anlage, trunk mesoderm anlage

dp

2R

-

HDC06636

BK003845

Maternal

dp, EST

2R

-

HDC07387

BK003934

Maternal, subset of cells until stage 12

-

2R

-

HDC07791

BK001850

Weak, ubiquitous at 4-8 h

-

3L

-

HDC08265

BK001908

Subset of cells

-

3L

-

HDC08749

BK001956

Weak, ubiquitous at 4-8 h

dp

3L

-

HDC09080

BK002002

Salivary glands

dp

3L

-

HDC09253

BK002020

Posterior spiracles, ectoderm

dp

3L

-

HDC09513

BK002067

Weak, ubiquitous at 4-8 h

dp

3R

-

HDC10019

BK002122

Salivary gland primordium, salivary glands

-

3L

Intron CG10741

HDC10028

BK002123

Ventral nerve cord

dp

3L

Intron CG12478

HDC10120

BK002139

Trunk mesoderm anlage, cuprophilic cells

-

3L

Intron CG 17697

HDC10292

BK002156

Lateral stripes blastoderm, third wave of neuroblasts

ag

3L

Predicted in 2.0 as CG17014

HDC10646

BK002195

Pole plasm, trunk mesoderm, salivary glands, embryonic midgut

dp

3L

-

HDC10913

BK002212

Anterior midgut primordium, posterior midgut primordium

dp

3L

Intron CG11614 (opposite strand)

HDC11249

BK002252

Malpighi, gonads

dp

3L

Intron CG32432 (opposite strand)

HDC11512

BK002283

Weak, ubiquitous at 4-8 h

dp

3L

-

HDC11876

BK002318

Weak, ubiquitous at 4-8 h

dp, EST

3R

Intron CG12163 (opposite strand)

HDC11908

BK002321

Ventral nerve cord, embryonic central nervous system

dp

3R

-

HDC12497

BK002400

Weak, ubiquitous at 4-8 h

-

3R

-

HDC12511

BK002404

Ectoderm

dp

3R

-

HDC12925

BK002446

Weak, ubiquitous at 4-8 h

EST

3R

-

HDC13248

BK002490

Weak, ubiquitous at 4-8 h

-

3R

-

HDC13350

BK002511

Ectoderm

-

3R

Intron CG7855 (opposite strand)

HDC13470

BK002532

Cellular blastoderm subset segmentally repeated, ectoderm, embryonic foregut, embryonic hindgut

dp, EST

3R

-

HDC13644

BK002551

Embryonic midgut, anal pads

-

3R

-

HDC13905

BK002563

Trunk mesoderm anlage, embryonic midgut

dp

3R

-

HDC14221

BK002623

Ventral ectoderm anlage, posterior endoderm anlage

dp

3R

Intron CG31243 (opposite strand)

HDC14231

BK002626

Maternal, salivary glands

dp, EST

3R

Short overlap with TE19396

HDC14493

BK002672

Dorsal vessel

ag, dp

3R

Intron CG31175

HDC15090

BK002773

Maternal

dp

3R

-

HDC15681

BK002831

Weak, ubiquitous at 4-8 h

dp, EST

3R

-

HDC15728

BK002837

Maternal

dp

3R

-

HDC16092

BK002888

Weak, ubiquitous at 4-8 h

dp

3R

-

HDC16243

BK002914

Anterior endoderm anlage, anterior midgut primordium, posterior midgut primordium

dp

3R

-

HDC16874

BK002959

Yolk nuclei, anterior endoderm anlage, embryonic midgut, subset of cells

ag

X

-

HDC16879

BK002961

Invaginating cells (hemocytes?/oenocytes?)

dp

X

-

HDC17351

BK003012

Embryonic gut

-

X

-

HDC18148

BK003079

Weak, ubiquitous at 4-8 h

-

X

-

HDC18326

BK003102

Weak, ubiquitous at 4-8 h

dp

X

Intron CG1691

HDC18410

BK003108

Weak, ubiquitous at 4-8 h

dp

X

-

HDC19378

BK003172

Weak, ubiquitous at 4-8 h

dp

3R

-

HDC19530

BK003190

Weak, ubiquitous at 4-8 h

-

X

-

HDC19643

BK003204

Midgut primordium, embryonic midgut

ag

X

Intron CG32541 (opposite strand)

HDC19645

BK003205

Cuprophilic cells

-

X

-

  1. For 40% of the novel genes tested we detected an expression pattern during embryonic development. Any overlap with regions conserved in D. pseudoobscura (dp), in A. gambiae (ag) or with D. melanogaster ESTs (EST) is listed. Note that the novel genes showing distinct in situ hybridization patterns are not enriched for conservation. With minimal overlap requirements applied, the numbers are consistent with those obtained for all Heidelberg Predictions (expressed and unexpressed) as described in the computational analysis of the combined annotation.
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Genome Biology

ISSN: 1474-760X

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