Table 4 Summary statistics of DNA polymorphisms analyzed in the study
| Â | Mitochondrial domain used for taxonomic comparisions | |||||||
|---|---|---|---|---|---|---|---|---|
Sequence Parameters | Complete Cyto-B gene | Partial Cyto-B gene | 16S rRNA gene | D-loop (CR-I) 233 bp | D-loop (CR-I) 545 bp | D-loop (CR-I) 651 bp | D-loop (CR-I) 675 bp | D-loop Region-II |
Sequences compared | 5 | 35 | 27 | 80 | 50 | 33 | 24 | 11 |
Sequence size compared (bp) | 1140 | 332 | 554 | 233 | 545 | 651 | 675 | 294 |
Sequence size without gaps/'N' (bp) | 1132 | 280 | 554 | 210 | 505 | 608 | 656 | 252 |
Polymorphic nucleotides | 232 | 77 | 32 | 35 | 72 | 73 | 75 | 22 |
Singleton polymorphic nucleotides | 178 | 34 | . | 14 | 33 | 39 | 44 | 16 |
Informative nucleotides | 54 | 43 | 32 | 21 | 39 | 34 | 31 | 6 |
Base composition (average) | Â | Â | Â | Â | Â | Â | Â | Â |
A : | 28.9% | 28.2% | 26.7% | 30.5% | 26.9% | 27.3% | 27.2% | 33.6% |
C : | 27.6% | 23.0% | 20.3% | 24.0% | 27.1% | 26.5% | 25.6% | 21.4% |
G : | 14.2% | 16.6% | 21.7% | 12.3% | 14.9% | 15.3% | 16.3% | 11.3% |
T : | 29.4% | 32.2% | 31.3% | 33.2% | 31.1% | 30.9% | 30.9% | 33.7% |
Observed Transition/transversion ratios (over all sites/sequences/pair-wise comparisions) | ||||||||
Average | 4.15 | 8.70 | 11.65 | 19.57 | 9.89 | 7.60 | 6.96 | 14.20 |
Mimimum | 2.80 | 0.00 | 5.70 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
Maximum | 18.75 | 26.00 | 11.00 | 15.00 | 23.00 | 24.00 | 25.00 | 12.00 |
Observed substitution statistics | ||||||||
   Over all sites/sequences/pair-wise comparisions | ||||||||
   No. of haplotypes | 5 | 18 | 6 | 36 | 39 | 28 |  | 10 |
   Number of Average substitutions | 106.0+66.0 | 12.35+9.57 | 7.21+0.93 | 4.97+0.15 | 9.65+0.83 | 11.15+1.7 |  | 5.53+1.5 |
   Nucleotide diversity (%) | 9.39+4.87 | 4.37+1.15 | 1.30+0.50 | 2.37+0.04 | 1.91+0.04 | 1.83+0.03 |  | 2.19+0.03 |
   Ks (%) | 57.2+48.6 | 19.2+16.5 |  |  |  |  |  |  |
   Ka (%) | 1.49+0.79 | 0.77+0.80 |  |  |  |  |  |  |
   HW vs. GW and wolf/dog popun from elsewhere | ||||||||
   Number of Average substitutions |  |  |  | 14.1+1.6 | 20.7+1.9 | 21.3+1.9 |  | 7.1+1.6 |
   Miminum-maximum substitutions |  |  |  | 11-16 | 17-24 | 18-25 |  | 5-9 |
   Median (Mode) substitutions |  |  |  | 14 (16) | 20 (19) | 21 (21) |  | 7 (7) |
   GW vs. HW and wolf/dog popun from elsewhere | ||||||||
   Number of Average substitutions |  |  |  | 13.4+1.3 | 17.3+1.6 | 18.0+2.0 |  | 5.1+1.6 |
   Miminum-maximum substitutions |  |  |  | 10-17 | 14-21 | 14-21 |  | 4-9 |
   Median (Mode) substitutions |  |  |  | 13 (13) | 17 (17) | 18 (19) |  | 5 (4) |
   Between different wolf/dog popun excluding HW/GW from India | ||||||||
   Number of Average substitutions |  |  |  | 4.5+2.23 | 7.4+3.2 | 7.6+3.4 |  | 3.1+1.3 |
   Miminum-maximum substitutions |  |  |  | 0-10 | 0-15 | 0-15 |  | 0-5 |
   Median (Mode) substitutions |  |  |  | 4 (4) | 8 (7) | 8 (7) |  | 3 (3) |