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Table 3 The complete list of bHLH genes from Drosophila melanogaster

From: Phylogenetic analysis of the human basic helix-loop-helix proteins

Full gene name

Symbol

ID

Family

Localization

Accession number

daughterless

da

CG5102

E12/E47

31D11-E1

pir||A31641

nautilus

nau

CG10250

MyoD

95B3-5

SW:P22816

achaete

ac

CG3796

Achaete-Scute a

1B1

gb|AAF45498.1

scute

sc

CG3827

Achaete-Scute a

1B1

gb|AAA28313.1

lethal of scute

l'sc

CG3839

Achaete-Scute a

1B1

gb|AAF45500.1

asense

ase

CG3258

Achaete-Scute a

1B1

gb|AAF45502.1

target of poxn (biparous)

tap (bp)

CG7659

Neurogenin

74B1-2

emb|CAA65103.1

Mist1-related

Mistr

CG8667

Mist

39D3

gb|AAF53991.1

Olig family

Oli

CG5545

Beta3

36C6-7

gb|AAF53631.1

cousin of atonal

cato

CG7760

Atonal

53A1-2

gb|AAF58026.1

atonal

ato

CG7508

Atonal

84F6

gb|AAF54209.1

absent MD and olfactory sensilla

amos

CG10393

Atonal

37A1-2

gb|AAF53678.1

net

net

CG11450

Net

21A5-B1

gb|AAF51562.1

HLH54F (MyoR * )

MyoR *

CG5005

MyoR

54E7-9

gb|AAF57795.1

salivary gland-expressed bHLH

sage

CG12952

Mesp

85D7-10

gb|AAF54351.1

paraxis *

Pxs *

CG12648

Paraxis

9A4

sp|Q9W2Z5

twist

twi

CG2956

Twist

59C2-3

emb|CAA32707.1

48 related 1

Fer1

CG10066

PTFa

84C3-4

gb|AAF54058.1

48 related 2

Fer2

CG5952

PTFb

89B9-12

gb|AAF55280.1

48 related 3

Fer3

CG6913

PTFb

86F1-2

gb|AAF54684.1

hand

Hand

CG18144

Hand

31D1-6

gb| AAF52900.1

HLH3b (SCL * )

SCL *

CG2655

SCL

3B3-4

gb|AAF45802.1

HLH4C (NSCL * )

NSCL *

CG3052

NSCL

4C6-7

gb|AAF45967.1

EG:114E2.2 (Mnt * )

Mnt *

CG2856

Mnt

3F2-3

sp|O46042

max

max

CG9648

Max

76A3

gb|AAF49179.1

diminutive

dm

CG10798

Myc

3D3-4

gb|AAB39842.1

USF

USF

CG17592

USF

4C4

gb|AAF45953.1

cropped

crp

CG7664

AP4

35F6-7

gb|AAF53510.1

bigmax

bmx

CG3350

TF4

97F5-6

gb|AAF56696.1

MLX *

MLX *

CG18362

MLX

39D1-2

gb|AAF53989.1

HLH106 (SREBP * )

SREBP *

CG8522

SREBP

76D1-3

gb|AAF49115.1

taiman

tai

CG13109

SRC

30A7-8

sp|Q9VLD9

clock

clk

CG7391

Clock

66A11-B1

gb|AAD10630.1

Resistance to Juvenile Hormone

Rst(1)JH

CG1705

Clock

10C6-8

gb|AAC14350.1

germ cell-expressed bHLH-PAS

gce

CG6211

Clock

13C1

gb|AAF48439.1

AHR2 *

AHR2 *

CG12561

AHR

96F14-97A1

gb|AAF56569.1

spineless

ss

CG6993

AHR

89C1-2

gb|AAD09205.1

single-minded

sim

CG7771

Sim

87D12-13

gb|AAF54902.1

trachealess

trh

CG6883

Trh

61C1

gb|AAA96754.1

similar (Hif-1)

sima

CG7951

HIF

99D5-F1

gb|AAC47303.1

tango

tgo

CG11987

ARNT

85C5-7

gb|AAF54329.1

cycle

cyc

CG8727

BMAL

76D2-3

gb|AAF49107.1

extramacrochaete

emc

CG1007

Emc

61D1-2

gb|AAF47413.1

Hey

Hey

CG11194

Hey

43F9-44A1

gb|AAF59152.1

Sticky ch1

Stich1

CG17100

Hey

86A5-6

gb|AAF24476.1

hairy

h

CG6494

Hairy

66D11-12

emb|CAA34018.1

deadpan

dpn

CG8704

Hairy

44B3-4

gb|AAB24149.1

similar to deadpan

side

CG10446

Hairy

37B9-11

gb|AAF53741.1

Enhancer of split m3

E(spl) m3

CG8346

E (spl)

96F10-12

gb|AAF56550.1

Enhancer of split m5

E(spl) m5

CG6096

E (spl)

96F10-12

emb|CAA34552.1

Enhancer of split m8

E(spl) m8

CG8365

E (spl)

96F10-12

sp|P13098

Enhancer of split m7

E(spl) m7

CG8361

E (spl)

96F10-12

emb|CAA34553.1

Enhancer of split mB (g)

E(spl) mB (g)

CG8333

E (spl)

96F10-12

gb|AAA28910.1

Enhancer of split mC (d)

E(spl) mC (d)

CG8328

E (spl)

96F10-12

gb|AAA28911.1

Enhancer of split mA (b)

E(spl) mA (b)

CG14548

E (spl)

96F10-12

gb|AAA28909.1

HES-related

Her

CG5927

E (spl)

17A3

gb|AAF48810.1

knot (collier)

kn (col)

CG10197

COE

51C2-5

gb|AAF58204.1

Delilah

del

CG5441

Orphan

97B1-2

gb|AAF56590.1

  1. Gene names (with commonly used synonyms in some cases) and their usual abbreviation are as reported in FlyBase [79,80], except those marked by an asterisk. In these cases, we propose names based on the orthology relationships with well-characterized vertebrate genes. Identification numbers are those from the Berkeley Drosophila Genome Project [81]. Sequences are listed with the family in which there are included (or stated as orphan genes), their chromosomal localization (position on the polytene chromosomes map as found in FlyBase), and their accession number. The 'orphan' gene Delilah clearly belongs to the high-order group A and is most probably a highly divergent NeuroD family gene (see [8] for discussion).