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Table 1 Genomes used in the present analysis

From: Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions

Organism name (strain) Number of ORFs ID
Aeropyrum pernix (K1) 2,694 aerpe
Aquifex aeolicus (VF5) 1,522 aquae
Archaeoglobus fulgidus (DSM4304) 2,409 arcfu
Bacillus subtilis (168) 4,100 bacsu
Borrelia burgdorferi (B31) + plasmids 1,639 borbu
Caenorhabditis elegans 19,099 caeel
Chlamydia pneumoniae (CWL029) 1,052 chlpn
Chlamydia trachomatis (serovar D) 894 chltr
Drosophila melanogaster 13,710 drome
Escherichia coli (K12-MG1655) 4,290 escco
Haemophilus influenzae (KW20) 1,707 haein
Helicobacter pylori (26695) 1,577 help2
Helicobacter pylori (J99) 1,495 helpj
Methanococcus jannaschii (DSM 2661) 1,773 metja
Methanobacterium thermoautotrophicum (delta) 1,871 metth
Mycoplasma genitalium (G-37) 479 mycge
Mycoplasma pneumoniae (M129) 677 mycpn
Mycobacterium tuberculosis (H37Rv) 3,924 myctu
Pyrococcus horikoshii (shinkaj OT3) 2,061 pyrho
Rickettsia prowazekii (Madrid E) 837 ricpr
Saccharomyces cerevisiae (S288C) 6,305 sacce
Synechocystis sp. (PCC 6803) 3,168 synsp
Thermotoga maritima (MSB8) 1,849 thema
Treponema pallidum (Nichols) 1,030 trepa
  1. The species/strain names, the number of ORFs and the species name abbreviation used in all figures are given. References for each genome can be found elsewhere [19].