Table 1 A comparison of the quality of material expected from the Celera Drosophila sequence to that achieved for use in assembly
From: Bioinformatics 2000
Description | Expectation | Final result |
|---|---|---|
Shotgun coverage | 10x | 14.6x |
Basepairs/read | 500 | 551 |
Reads in pairs | 70% | 72% |
Insert length distance | +/-3% variation | +/-3% variation |
False positive rate on mate pairs | <1% | <0.34% |
Map-coverage (BAC pairs) | 15x | 13.18x |
Long-to-short ratio | 1-4 | 1-1.32 |