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Table 1 Putative formin-related genes of Arabidopsis thaliana

From: Are plant formins integral membrane proteins?

  

Protein

    

Number

 
 

Primary

sequence

ORF

ORF

  

of

 

Gene

accession

accession

location*

size†

Type

Chr‡

introns

Notes

AtFORMIN1

gb|AC002062

gb|AAB61101

47 640...48 637;

760

Genomic

I

I

AtORF2 in [6]

 

(emb|T43335)

 

48 716...50 000

 

(EST)

   

AtFORMIN2

gb|AC0022333

gb|AAB64026

28 161...26 738;

894

Genomic

II

3

AtORF1 in [6]

 

(gb|AI997606)

 

26 653...26 466;

 

(EST)

   
   

26 314...26 061;

     
   

25 979...25 161

     
   

(R)

     

AtFORMIN3

emb|Z97338

gb|CAB10299

30 407... 30 285;

589

Genomic

IV

6

Sequencing error at

   

30 171... 29 688;

    

the 5' end leading to

   

29 608... 29 146;

    

ORF truncation?

   

29 075... 28 870;

     
   

28 800... 28 683;

     
   

28 602... 28 566;

     
   

28 485... 28 147

     
   

(R)

     

AtFORMIN4

gb|AC002396

gb|AAC00575

28 830... 29 848;

825

Genomic

I

3

ORF extends 15 base

 

(gb|AI998115)

 

29 951... 30 296;

 

(EST)

  

pairs upstream of the

   

30 542...31 218;

    

reported ATG;

   

31 885... 31 320

    

alternative splicing

        

possible

AtFORMIN5

dbj|AB016879

 

67 574... 67 401;

705

Genomic

V

5

Alternative splicing

   

66 710... 66 520;

    

possible

   

66 171... 66 092;

     
   

66 004... 65 389;

     
   

65 298... 65 099;

     
   

64 637... 63 784;

     
   

(R)

     

AtFORMIN6

dbj|AB013390

 

6 001... 7 470;

910

Genomic

V

3

 
 

(emb|F19772)

 

7 550... 7 757;

 

(EST)

   
   

8 244... 8 506;

     
   

8 587... 9 378

     

AtFORMIN7

gb|AC007258

gb|AAD39332

121 331... 120 011;

929

Genomic

I

I

 
   

122 896...121 428;(R)

     

AtFORMIN8

dbj|AB025639

 

41 595... 39 722;

1051

Genomic

III

3

 
 

(emb|Z181512)

 

39 635... 39 430;

 

(EST)

   
   

39 248... 39 004

     
   

38 919... 38 092

     
   

(R)

     
  1. * ORF coordinates refer to the longest putative ORF in the first sequence (first primary accession) listed. (R), reverse complement. † The OFR size is given in codons. ‡ Chr, chromosome number.
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