Fig. 4
From: Methylome decoding of RdDM-mediated reprogramming effects in the Arabidopsis MSH1 system
Discrimination of methylation repatterning among different msh1 states. a Hierarchical clustering results with genic methylome data from three different msh1 states in Arabidopsis: msh1 null mutant (state 1), Col-0/Col-0msh1 graft progeny (state 3), Epi F3 populations (state 4), and relevant Col-0 controls. b Hierarchical clustering results with TE DMP data from the same Arabidopsis datasets presented in panel a. Individuals were represented as vectors of the sum of Hellinger divergences (HD) at DMP positions within gene regions (a) or TE regions (b). The hierarchical clustering was built using Ward agglomeration method, and Hellinger divergence (HD) was computed by using the centroid of corresponding wild type samples. HD formula is reported elsewhere [21]